Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq5610 96.9 3e-15
seq2874 96.9 3e-15
seq8609 84.2 2e-11
seq29489 82.4 7e-11
seq2911 82.4 7e-11
>seq5610
Length=141783
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | |
Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || || ||| ||| ||||| || || || || || ||||||
Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| ||||| | | |||||||||| | ||||||| || | | | ||||| ||
Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612
Query 25355 ATTCAAAAAGAATCCACCATTCA 25377
||||| ||||| || ||| ||||
Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635
>seq2874
Length=261101
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | |
Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || || ||| ||| ||||| || || || || || ||||||
Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| ||||| | | |||||||||| | ||||||| || | | | ||||| ||
Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257
Query 25355 ATTCAAAAAGAATCCACCATTCA 25377
||||| ||||| || ||| ||||
Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280
>seq8609
Length=114046
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | |||||||| ||||||| |||| ||||| |
Sbjct 20933 ATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCT 20992
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || ||| ||||| || || || || || ||||| || |||
Sbjct 20993 GACACGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 21052
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | ||||| | || ||| || |||||||| || | | | | | ||||||||||
Sbjct 21053 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAAT 21112
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
|| || || ||||| || |||||
Sbjct 21113 ATCCAGAAGGAATCGACTCTTCAT 21136
>seq29489
Length=97735
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 31964 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 31905
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 31904 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 31846
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 31845 AAGGCTTAGAGGAGGAACCATGATCA 31820
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 37452 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 37393
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 37392 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 37334
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 37333 AAGGCTTAGAGGAGGAACCATGATCA 37308
>seq2911
Length=225525
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 23044 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 22985
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 22984 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 22926
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 22925 AAGGCTTAGAGGAGGAACCATGATCA 22900
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 29158 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 29099
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 29098 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 29040
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 29039 AAGGCTTAGAGGAGGAACCATGATCA 29014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444928874956320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |