Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5610 96.9 3e-15 seq2874 96.9 3e-15 seq8609 84.2 2e-11 seq29489 82.4 7e-11 seq2911 82.4 7e-11 >seq5610 Length=141783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | | Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| ||||| || || || || || |||||| Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | | |||||||||| | ||||||| || | | | ||||| || Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||| || ||| |||| Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635 >seq2874 Length=261101 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | | Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| ||||| || || || || || |||||| Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | | |||||||||| | ||||||| || | | | ||||| || Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||| || ||| |||| Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280 >seq8609 Length=114046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| ||||||| |||| ||||| | Sbjct 20933 ATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCT 20992 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || || || || || ||||| || ||| Sbjct 20993 GACACGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 21052 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||| || |||||||| || | | | | | |||||||||| Sbjct 21053 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAAT 21112 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||| || ||||| Sbjct 21113 ATCCAGAAGGAATCGACTCTTCAT 21136 >seq29489 Length=97735 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 31964 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 31905 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 31904 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 31846 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 31845 AAGGCTTAGAGGAGGAACCATGATCA 31820 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 37452 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 37393 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 37392 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 37334 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 37333 AAGGCTTAGAGGAGGAACCATGATCA 37308 >seq2911 Length=225525 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 23044 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 22985 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 22984 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 22926 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 22925 AAGGCTTAGAGGAGGAACCATGATCA 22900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 29158 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 29099 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 29098 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 29040 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 29039 AAGGCTTAGAGGAGGAACCATGATCA 29014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444928874956320