Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq5610 100 2e-16
seq2874 100 2e-16
seq16075 91.5 1e-13
seq25104 87.8 1e-12
seq9953 86.0 5e-12
seq12924 84.2 2e-11
seq10219 84.2 2e-11
seq6889 82.4 6e-11
>seq5610
Length=141783
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | |
Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | | || || ||| ||| || || ||||| | || ||||||
Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| |||
Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612
Query 106440 ATACAAAAAGAATCTACACTACA 106462
|| || ||||| ||||| || ||
Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635
>seq2874
Length=261101
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | |
Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | | || || ||| ||| || || ||||| | || ||||||
Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| |||
Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257
Query 106440 ATACAAAAAGAATCTACACTACA 106462
|| || ||||| ||||| || ||
Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280
>seq16075
Length=278268
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317
|||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| ||
Sbjct 276438 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 276379
Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377
| || | ||| | | |||||| || ||| ||||||||||| | || || |
Sbjct 276378 G--ATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 276321
Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437
||||||| | |||| ||| || |||||| | |||||| | |||| | | |||||| |
Sbjct 276320 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATA 276261
Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468
| || || || || ||||| || ||||| ||
Sbjct 276260 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 276230
>seq25104
Length=148940
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317
|||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| | ||
Sbjct 36076 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGCTCG 36135
Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377
| || | ||| | |||||| || ||| ||||||||||| | || || |
Sbjct 36136 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 36193
Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437
||||||| | |||| ||| || |||||| | |||||| | ||| | | |||||| |
Sbjct 36194 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATA 36253
Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468
| || || || || ||||| || ||||| ||
Sbjct 36254 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 36284
>seq9953
Length=604776
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || || || ||||| |||| ||||||||||| || ||||| ||| |
Sbjct 355080 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCT 355021
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | | || || ||| || ||||| |||||| | || || ||
Sbjct 355020 GACACCATTGACAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAG 354961
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| || |||||| | || || | || ||| ||||||||||
Sbjct 354960 CAAAGGCTCATATTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACAAC 354901
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || || || || || || ||||| ||||||||| | || || ||
Sbjct 354900 ATCCAGAAGGAGTCCACCCTCCATTTGGTATTGAGGCTTCGTGGTGG 354854
>seq12924
Length=310248
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||| ||||| | ||||| || ||||| ||| | || ||| | |
Sbjct 59354 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 59413
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || ||| | || || ||||| |||||||||||| | || || |||
Sbjct 59414 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 59473
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| |||||||||| ||| || |||||| | || ||| |||| | | ||| ||||||
Sbjct 59474 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 59533
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| || || || || || ||||
Sbjct 59534 ATCCAAAAGGAGTCCACCCTCCACCTAGT 59562
>seq10219
Length=308859
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||| ||||| | ||||| |||||||| ||| | || |||| | |
Sbjct 22060 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 22119
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || | | | || || ||||| ||||||||||| | || || |||
Sbjct 22120 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 22179
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||||||||| | ||| || |||||| | || ||| |||| | | ||| ||||||
Sbjct 22180 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 22239
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| || || || || || ||||
Sbjct 22240 ATCCAAAAGGAGTCCACCCTCCACCTAGT 22268
>seq6889
Length=136205
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| ||||| ||||| ||||||||||| || || || || |||| |||
Sbjct 106425 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 106484
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | | ||||| ||| ||| ||||| ||||| | ||| |||||
Sbjct 106485 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 106544
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| ||||| ||||| || ||| | ||| | | ||||| |||
Sbjct 106545 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 106604
Query 106440 ATACAAAAAGAATCTACACTACA 106462
|| || ||||| || || || ||
Sbjct 106605 ATTCAGAAAGAGTCCACCCTTCA 106627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402183719184608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |