Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq5610 100 2e-16 seq2874 100 2e-16 seq16075 91.5 1e-13 seq25104 87.8 1e-12 seq9953 86.0 5e-12 seq12924 84.2 2e-11 seq10219 84.2 2e-11 seq6889 82.4 6e-11 >seq5610 Length=141783 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | | Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||| ||| || || ||||| | || |||||| Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| ||| Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| ||||| || || Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635 >seq2874 Length=261101 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | | Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||| ||| || || ||||| | || |||||| Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| ||| Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| ||||| || || Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280 >seq16075 Length=278268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317 |||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| || Sbjct 276438 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 276379 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 | || | ||| | | |||||| || ||| ||||||||||| | || || | Sbjct 276378 G--ATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 276321 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| | |||| ||| || |||||| | |||||| | |||| | | |||||| | Sbjct 276320 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATA 276261 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 | || || || || ||||| || ||||| || Sbjct 276260 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 276230 >seq25104 Length=148940 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317 |||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| | || Sbjct 36076 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGCTCG 36135 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 | || | ||| | |||||| || ||| ||||||||||| | || || | Sbjct 36136 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 36193 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| | |||| ||| || |||||| | |||||| | ||| | | |||||| | Sbjct 36194 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATA 36253 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 | || || || || ||||| || ||||| || Sbjct 36254 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 36284 >seq9953 Length=604776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || ||||| |||| ||||||||||| || ||||| ||| | Sbjct 355080 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCT 355021 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || || ||| || ||||| |||||| | || || || Sbjct 355020 GACACCATTGACAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAG 354961 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| || |||||| | || || | || ||| |||||||||| Sbjct 354960 CAAAGGCTCATATTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACAAC 354901 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || || || || ||||| ||||||||| | || || || Sbjct 354900 ATCCAGAAGGAGTCCACCCTCCATTTGGTATTGAGGCTTCGTGGTGG 354854 >seq12924 Length=310248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | ||||| || ||||| ||| | || ||| | | Sbjct 59354 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 59413 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || ||||| |||||||||||| | || || ||| Sbjct 59414 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 59473 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| || |||||| | || ||| |||| | | ||| |||||| Sbjct 59474 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 59533 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || || || || || |||| Sbjct 59534 ATCCAAAAGGAGTCCACCCTCCACCTAGT 59562 >seq10219 Length=308859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | ||||| |||||||| ||| | || |||| | | Sbjct 22060 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 22119 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || || ||||| ||||||||||| | || || ||| Sbjct 22120 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 22179 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||||||||| | ||| || |||||| | || ||| |||| | | ||| |||||| Sbjct 22180 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 22239 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || || || || || |||| Sbjct 22240 ATCCAAAAGGAGTCCACCCTCCACCTAGT 22268 >seq6889 Length=136205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| ||||||||||| || || || || |||| ||| Sbjct 106425 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 106484 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | ||||| ||| ||| ||||| ||||| | ||| ||||| Sbjct 106485 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 106544 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| ||||| ||||| || ||| | ||| | | ||||| ||| Sbjct 106545 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 106604 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| || || || || Sbjct 106605 ATTCAGAAAGAGTCCACCCTTCA 106627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402183719184608