Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 302 6e-76
seq29212 282 6e-70
seq28581 190 3e-42
seq7920 178 2e-38
>seq22586
Length=877411
Score = 302 bits (334), Expect = 6e-76
Identities = 412/562 (73%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773
||||| |||||| || ||||| |||| || ||| |||| || |||| |||| ||
Sbjct 444428 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 444370
Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833
| |||||||||||||| | |||| |||| || || ||||||||||| ||||| |||||
Sbjct 444369 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 444312
Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892
|| |||| | ||| |||||| | || | || ||| |||| || ||||| |
Sbjct 444311 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 444253
Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952
||||| ||||||||||| ||||||| ||||||||| || |||||||| || | |
Sbjct 444252 TCACGTTCTCGCCTTTTT-CGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 444194
Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012
| || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| |
Sbjct 444193 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 444134
Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072
||||||| |||||||| || | ||| ||||| |||| || ||| | || || | |
Sbjct 444133 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 444074
Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
|| ||| ||| || || ||||||||||| |||||||||| ||| ||||| ||||
Sbjct 444073 ATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 444014
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191
| ||||| ||||| |||||| || ||| || ||||| ||||| ||| | |||
Sbjct 444013 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 443960
Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250
||||| |||| ||||| ||||||||||| || |||||||| ||||| |||||| | |
Sbjct 443959 CTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 443900
Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272
| ||| | || | ||||||||
Sbjct 443899 AAAAGAGGGGGTTAATGCCCGG 443878
Score = 302 bits (334), Expect = 6e-76
Identities = 412/562 (73%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773
||||| |||||| || ||||| |||| || ||| |||| || |||| |||| ||
Sbjct 447563 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 447505
Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833
| |||||||||||||| | |||| |||| || || ||||||||||| ||||| |||||
Sbjct 447504 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 447447
Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892
|| |||| | ||| |||||| | || | || ||| |||| || ||||| |
Sbjct 447446 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 447388
Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952
||||| ||||||||||| ||||||| ||||||||| || |||||||| || | |
Sbjct 447387 TCACGTTCTCGCCTTTTT-CGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 447329
Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012
| || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| |
Sbjct 447328 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 447269
Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072
||||||| |||||||| || | ||| ||||| |||| || ||| | || || | |
Sbjct 447268 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 447209
Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
|| ||| ||| || || ||||||||||| |||||||||| ||| ||||| ||||
Sbjct 447208 ATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 447149
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191
| ||||| ||||| |||||| || ||| || ||||| ||||| ||| | |||
Sbjct 447148 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 447095
Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250
||||| |||| ||||| ||||||||||| || |||||||| ||||| |||||| | |
Sbjct 447094 CTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 447035
Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272
| ||| | || | ||||||||
Sbjct 447034 AAAAGAGGGGGTTAATGCCCGG 447013
>seq29212
Length=358297
Score = 282 bits (312), Expect = 6e-70
Identities = 401/559 (72%), Gaps = 10/559 (2%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||| |||| | |||||| ||||||| | ||||||| |||| |||| | |
Sbjct 222613 GAGCCGTTGCTAGCCTCCAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 222672
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|||||||||||||| | |||| |||| ||||| |||||||| |||||||| || || ||
Sbjct 222673 ATATGGGAAATGTATAAGAAAG-CCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 222731
Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895
| |||| |||||| || | || |||||| ||||| ||||||| ||
Sbjct 222732 CTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCGACGAACGCCACTTCATCAGTCA 222791
Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955
||||| ||||| || |||||| |||||||||||| || || || || | ||||
Sbjct 222792 TGTCCTTGCCTTCTT-CGCCGCATCCGATGGCATCGTTCTAGAAAATCTCGCTGTTCGCT 222850
Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015
| ||||||||||||||| | | ||||| ||| ||||| || ||||| ||||||||||
Sbjct 222851 TCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCG 222910
Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075
| || ||||||||||| | || ||||| |||| || || | || || | ||
Sbjct 222911 AGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCG 222970
Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135
| || ||| |||||| | ||| | || |||||||||| ||| ||||| ||||| |
Sbjct 222971 AAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATT 223030
Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCT 1456194
|||| |||| |||||| || ||| ||| | |||||||| ||| | ||| |
Sbjct 223031 GGGCTTTGAAATGGATC------GACGGCGGCGAAGCTTTTGCCGAACGGTTAATCGCTT 223084
Query 1456195 TTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253
| || |||| || ||||| |||||||| ||||||||||| || || |||||| | || |
Sbjct 223085 TCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAA 223144
Query 1456254 AGCGCGGCCTCATGCCCGG 1456272
||||||| | ||||| ||
Sbjct 223145 AGCGCGGGTTAATGCCTGG 223163
>seq28581
Length=397638
Score = 190 bits (210), Expect = 3e-42
Identities = 231/312 (74%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||| |||| | |||||| ||||||| | ||||||| |||| |||| | |
Sbjct 35244 GAGCCGTTGCTAGCCTCCAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 35185
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
||||||||||||||| | |||| |||| ||||| |||||||| |||||||| || || ||
Sbjct 35184 ATATGGGAAATGTACAAGAAAG-CCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 35126
Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895
| |||| |||||| || | || |||||| ||||| ||||||| ||
Sbjct 35125 CTCTTCCGATCTTCCACACTGGCAAAATCTTACCGCCGACGAACGCCACTTCATCAGTCA 35066
Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955
|| || |||| || |||||| |||||||||||| ||| || || |||| ||||
Sbjct 35065 TGTTCTTGCCTACTT-CGCCGCATCCGATGGCATCGTCCTCGAAAATCTCGCCGTTCGCT 35007
Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015
| ||||||||||||||| | ||||||| ||| ||||| || ||||| ||||||||||
Sbjct 35006 TCATGAAAGAGGTCCAAATCGCAGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCG 34947
Query 1456016 AAAACATCCACT 1456027
| || |||||||
Sbjct 34946 AGAATATCCACT 34935
Score = 113 bits (124), Expect = 6e-19
Identities = 147/201 (73%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133
||| || ||| |||||| | ||| | || |||||||||| ||| ||||| |||||
Sbjct 34337 CGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGA 34278
Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192
||||| | || |||||| || |||| ||| |||| ||||| ||| | |||
Sbjct 34277 TTGGGCTTTCAAATGGATCGAC------GGCCGCGAAGCTTTTGCCGAACGGTTAATCGC 34224
Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251
|| || |||| || ||||| |||||||| |||||||||||||| || |||||| | ||
Sbjct 34223 TTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGCGCGATATTTTGGTTAAA 34164
Query 1456252 GAAGCGCGGCCTCATGCCCGG 1456272
|||||||| | ||||| ||
Sbjct 34163 AAAGCGCGGGTTAATGCCTGG 34143
>seq7920
Length=357604
Score = 178 bits (196), Expect = 2e-38
Identities = 237/319 (74%), Gaps = 8/319 (3%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773
||||| |||||| || ||||| |||| || ||| |||| || |||| |||| ||
Sbjct 357287 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 357345
Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833
| |||||||||||||| | |||| |||| || || ||||||||||| ||||| |||||
Sbjct 357346 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 357403
Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892
|| |||| | ||| |||||| | || | || ||| |||| || ||||| |
Sbjct 357404 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 357462
Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952
||||| |||||||||| |||||||| ||||||||| || |||||||| || | |
Sbjct 357463 TCACGTTCTCGCCTTTT-TCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 357521
Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012
| || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| |
Sbjct 357522 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 357581
Query 1456013 TCGAAAACATCCACTCTGA 1456031
||||||| |||||||| ||
Sbjct 357582 TCGAAAATATCCACTCCGA 357600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7174941661367662
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