Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22586 302 6e-76 seq29212 282 6e-70 seq28581 190 3e-42 seq7920 178 2e-38 >seq22586 Length=877411 Score = 302 bits (334), Expect = 6e-76 Identities = 412/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773 ||||| |||||| || ||||| |||| || ||| |||| || |||| |||| || Sbjct 444428 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 444370 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| Sbjct 444369 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 444312 Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || |||| | ||| |||||| | || | || ||| |||| || ||||| | Sbjct 444311 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 444253 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| ||||||||||| ||||||| ||||||||| || |||||||| || | | Sbjct 444252 TCACGTTCTCGCCTTTTT-CGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 444194 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| | Sbjct 444193 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 444134 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 ||||||| |||||||| || | ||| ||||| |||| || ||| | || || | | Sbjct 444133 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 444074 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 || ||| ||| || || ||||||||||| |||||||||| ||| ||||| |||| Sbjct 444073 ATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 444014 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 | ||||| ||||| |||||| || ||| || ||||| ||||| ||| | ||| Sbjct 444013 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 443960 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| ||||||||||| || |||||||| ||||| |||||| | | Sbjct 443959 CTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 443900 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | ||| | || | |||||||| Sbjct 443899 AAAAGAGGGGGTTAATGCCCGG 443878 Score = 302 bits (334), Expect = 6e-76 Identities = 412/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773 ||||| |||||| || ||||| |||| || ||| |||| || |||| |||| || Sbjct 447563 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 447505 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| Sbjct 447504 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 447447 Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || |||| | ||| |||||| | || | || ||| |||| || ||||| | Sbjct 447446 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 447388 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| ||||||||||| ||||||| ||||||||| || |||||||| || | | Sbjct 447387 TCACGTTCTCGCCTTTTT-CGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 447329 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| | Sbjct 447328 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 447269 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 ||||||| |||||||| || | ||| ||||| |||| || ||| | || || | | Sbjct 447268 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 447209 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 || ||| ||| || || ||||||||||| |||||||||| ||| ||||| |||| Sbjct 447208 ATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 447149 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 | ||||| ||||| |||||| || ||| || ||||| ||||| ||| | ||| Sbjct 447148 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 447095 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| ||||||||||| || |||||||| ||||| |||||| | | Sbjct 447094 CTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 447035 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | ||| | || | |||||||| Sbjct 447034 AAAAGAGGGGGTTAATGCCCGG 447013 >seq29212 Length=358297 Score = 282 bits (312), Expect = 6e-70 Identities = 401/559 (72%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||| |||| | |||||| ||||||| | ||||||| |||| |||| | | Sbjct 222613 GAGCCGTTGCTAGCCTCCAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 222672 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||||||||||| | |||| |||| ||||| |||||||| |||||||| || || || Sbjct 222673 ATATGGGAAATGTATAAGAAAG-CCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 222731 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | |||| |||||| || | || |||||| ||||| ||||||| || Sbjct 222732 CTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCGACGAACGCCACTTCATCAGTCA 222791 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||||| ||||| || |||||| |||||||||||| || || || || | |||| Sbjct 222792 TGTCCTTGCCTTCTT-CGCCGCATCCGATGGCATCGTTCTAGAAAATCTCGCTGTTCGCT 222850 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||||||||||||| | | ||||| ||| ||||| || ||||| |||||||||| Sbjct 222851 TCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCG 222910 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || ||||||||||| | || ||||| |||| || || | || || | || Sbjct 222911 AGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCG 222970 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | || ||| |||||| | ||| | || |||||||||| ||| ||||| ||||| | Sbjct 222971 AAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATT 223030 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCT 1456194 |||| |||| |||||| || ||| ||| | |||||||| ||| | ||| | Sbjct 223031 GGGCTTTGAAATGGATC------GACGGCGGCGAAGCTTTTGCCGAACGGTTAATCGCTT 223084 Query 1456195 TTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | || |||| || ||||| |||||||| ||||||||||| || || |||||| | || | Sbjct 223085 TCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAA 223144 Query 1456254 AGCGCGGCCTCATGCCCGG 1456272 ||||||| | ||||| || Sbjct 223145 AGCGCGGGTTAATGCCTGG 223163 >seq28581 Length=397638 Score = 190 bits (210), Expect = 3e-42 Identities = 231/312 (74%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||| |||| | |||||| ||||||| | ||||||| |||| |||| | | Sbjct 35244 GAGCCGTTGCTAGCCTCCAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 35185 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 ||||||||||||||| | |||| |||| ||||| |||||||| |||||||| || || || Sbjct 35184 ATATGGGAAATGTACAAGAAAG-CCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 35126 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | |||| |||||| || | || |||||| ||||| ||||||| || Sbjct 35125 CTCTTCCGATCTTCCACACTGGCAAAATCTTACCGCCGACGAACGCCACTTCATCAGTCA 35066 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || || |||| || |||||| |||||||||||| ||| || || |||| |||| Sbjct 35065 TGTTCTTGCCTACTT-CGCCGCATCCGATGGCATCGTCCTCGAAAATCTCGCCGTTCGCT 35007 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||||||||||||| | ||||||| ||| ||||| || ||||| |||||||||| Sbjct 35006 TCATGAAAGAGGTCCAAATCGCAGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCG 34947 Query 1456016 AAAACATCCACT 1456027 | || ||||||| Sbjct 34946 AGAATATCCACT 34935 Score = 113 bits (124), Expect = 6e-19 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||| || ||| |||||| | ||| | || |||||||||| ||| ||||| ||||| Sbjct 34337 CGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGA 34278 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| | || |||||| || |||| ||| |||| ||||| ||| | ||| Sbjct 34277 TTGGGCTTTCAAATGGATCGAC------GGCCGCGAAGCTTTTGCCGAACGGTTAATCGC 34224 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 || || |||| || ||||| |||||||| |||||||||||||| || |||||| | || Sbjct 34223 TTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGCGCGATATTTTGGTTAAA 34164 Query 1456252 GAAGCGCGGCCTCATGCCCGG 1456272 |||||||| | ||||| || Sbjct 34163 AAAGCGCGGGTTAATGCCTGG 34143 >seq7920 Length=357604 Score = 178 bits (196), Expect = 2e-38 Identities = 237/319 (74%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773 ||||| |||||| || ||||| |||| || ||| |||| || |||| |||| || Sbjct 357287 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 357345 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| Sbjct 357346 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 357403 Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || |||| | ||| |||||| | || | || ||| |||| || ||||| | Sbjct 357404 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAG 357462 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||||| |||||||| ||||||||| || |||||||| || | | Sbjct 357463 TCACGTTCTCGCCTTTT-TCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 357521 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| | Sbjct 357522 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 357581 Query 1456013 TCGAAAACATCCACTCTGA 1456031 ||||||| |||||||| || Sbjct 357582 TCGAAAATATCCACTCCGA 357600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174941661367662