Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 165 6e-36
seq29212 150 1e-31
seq28581 102 6e-17
>seq22586
Length=877411
Score = 165 bits (182), Expect = 6e-36
Identities = 394/586 (67%), Gaps = 16/586 (3%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| ||||
Sbjct 444391 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 444332
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824
|||| ||||| ||||| ||| || || || ||| | ||| | ||| | | |||
Sbjct 444331 GGACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTCAC-TGGGAA---ACTCTCACC 444276
Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882
| | || | || || || | ||| | || ||||| || || ||| || |||
Sbjct 444275 GCCGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 444216
Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942
||| ||| || | | | |||||| | |||| || || | | || || || |
Sbjct 444215 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 444156
Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002
|||||||| || ||||| || || |||||||| || || || ||||||||||| || |
Sbjct 444155 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 444096
Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062
|| || ||||| |||||| | || ||| | || | || || || || || ||
Sbjct 444095 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 444036
Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119
|| || | |||| ||||| || ||||| | |||||||| | || ||
Sbjct 444035 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 443979
Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179
|| | ||||| | |||| ||||| || || || || || || || ||| ||||
Sbjct 443978 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAA-GTTT 443920
Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238
| ||||||||||||||||| || | || || ||||| || || || || ||||| ||
Sbjct 443919 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 443860
Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|||||| || |||||||| | || || ||||| |||||||||
Sbjct 443859 GTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 443814
Score = 165 bits (182), Expect = 6e-36
Identities = 394/586 (67%), Gaps = 16/586 (3%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| ||||
Sbjct 447526 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 447467
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824
|||| ||||| ||||| ||| || || || ||| | ||| | ||| | | |||
Sbjct 447466 GGACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTCAC-TGGGAA---ACTCTCACC 447411
Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882
| | || | || || || | ||| | || ||||| || || ||| || |||
Sbjct 447410 GCCGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 447351
Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942
||| ||| || | | | |||||| | |||| || || | | || || || |
Sbjct 447350 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 447291
Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002
|||||||| || ||||| || || |||||||| || || || ||||||||||| || |
Sbjct 447290 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 447231
Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062
|| || ||||| |||||| | || ||| | || | || || || || || ||
Sbjct 447230 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 447171
Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119
|| || | |||| ||||| || ||||| | |||||||| | || ||
Sbjct 447170 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 447114
Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179
|| | ||||| | |||| ||||| || || || || || || || ||| ||||
Sbjct 447113 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAA-GTTT 447055
Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238
| ||||||||||||||||| || | || || ||||| || || || || ||||| ||
Sbjct 447054 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 446995
Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|||||| || |||||||| | || || ||||| |||||||||
Sbjct 446994 GTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 446949
>seq29212
Length=358297
Score = 150 bits (166), Expect = 1e-31
Identities = 388/583 (67%), Gaps = 10/583 (2%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| ||||| ||||| | | |||||| ||||||| || ||||| | || || ||||
Sbjct 222650 TGTTCCCAATCCAATACCCACAGATATGGGAAATGTATAAGAAAGCCGAAGCCTCTTTTT 222709
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825
|||| || || ||||||||| | || || | |||| ||| | |||| ||
Sbjct 222710 GGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCG 222769
Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885
| ||| || || || | || | || || || || || ||| || || ||
Sbjct 222770 -ACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGATGGCATCGTT 222828
Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945
|||||| | | | ||| || | |||| || ||| | | || || || |||
Sbjct 222829 CTAGAAAATCTCGCTGTTCGCTTCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTT 222888
Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005
||||| || ||||| ||||| || ||||| || || || ||||| ||||| || | ||
Sbjct 222889 TATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAA 222948
Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064
|| || || |||||| ||| || | || | || | || | ||||| || ||
Sbjct 222949 ACTTATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCG 223008
Query 44065 TGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122
|||| |||| ||||| || ||||| | |||||||| | || |||||
Sbjct 223009 TGCGTGGCTAAA---AAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTT 223065
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
| ||||| | |||| || || || |||||||| || || || || |||| |
Sbjct 223066 GCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCA-GTTTCTG 223124
Query 44183 -GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241
|| |||||||||||||| || || || || |||||||| || || || ||||| |||||
Sbjct 223125 TGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTT 223184
Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| ||| |||||||| | |||||||| ||||||||||||
Sbjct 223185 GATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 223227
>seq28581
Length=397638
Score = 102 bits (112), Expect = 6e-17
Identities = 125/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177
|||||| ||||| | |||| || || || |||||||| || || || || |
Sbjct 34245 CTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTT 34186
Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236
| |||| | |||||||||||||| || || || || |||||||| || || || |||||
Sbjct 34185 TCTGCG-CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAAC 34127
Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
||||| || ||| |||||||| | |||||||| ||||||||||||
Sbjct 34126 GAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 34079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397311886304755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |