Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22586 165 6e-36 seq29212 150 1e-31 seq28581 102 6e-17 >seq22586 Length=877411 Score = 165 bits (182), Expect = 6e-36 Identities = 394/586 (67%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| |||| Sbjct 444391 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 444332 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| ||||| ||||| ||| || || || ||| | ||| | ||| | | ||| Sbjct 444331 GGACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTCAC-TGGGAA---ACTCTCACC 444276 Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | || | || || || | ||| | || ||||| || || ||| || ||| Sbjct 444275 GCCGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 444216 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| ||| || | | | |||||| | |||| || || | | || || || | Sbjct 444215 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 444156 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || ||||| || || |||||||| || || || ||||||||||| || | Sbjct 444155 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 444096 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||||| | || ||| | || | || || || || || || Sbjct 444095 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 444036 Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || || | |||| ||||| || ||||| | |||||||| | || || Sbjct 444035 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 443979 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 || | ||||| | |||| ||||| || || || || || || || ||| |||| Sbjct 443978 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAA-GTTT 443920 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||||||||||||||| || | || || ||||| || || || || ||||| || Sbjct 443919 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 443860 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || |||||||| | || || ||||| ||||||||| Sbjct 443859 GTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 443814 Score = 165 bits (182), Expect = 6e-36 Identities = 394/586 (67%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| |||| Sbjct 447526 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 447467 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| ||||| ||||| ||| || || || ||| | ||| | ||| | | ||| Sbjct 447466 GGACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTCAC-TGGGAA---ACTCTCACC 447411 Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | || | || || || | ||| | || ||||| || || ||| || ||| Sbjct 447410 GCCGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 447351 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| ||| || | | | |||||| | |||| || || | | || || || | Sbjct 447350 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 447291 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || ||||| || || |||||||| || || || ||||||||||| || | Sbjct 447290 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 447231 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||||| | || ||| | || | || || || || || || Sbjct 447230 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 447171 Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || || | |||| ||||| || ||||| | |||||||| | || || Sbjct 447170 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 447114 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 || | ||||| | |||| ||||| || || || || || || || ||| |||| Sbjct 447113 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAA-GTTT 447055 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||||||||||||||| || | || || ||||| || || || || ||||| || Sbjct 447054 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 446995 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || |||||||| | || || ||||| ||||||||| Sbjct 446994 GTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 446949 >seq29212 Length=358297 Score = 150 bits (166), Expect = 1e-31 Identities = 388/583 (67%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | |||||| ||||||| || ||||| | || || |||| Sbjct 222650 TGTTCCCAATCCAATACCCACAGATATGGGAAATGTATAAGAAAGCCGAAGCCTCTTTTT 222709 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825 |||| || || ||||||||| | || || | |||| ||| | |||| || Sbjct 222710 GGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCG 222769 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | ||| || || || | || | || || || || || ||| || || || Sbjct 222770 -ACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGATGGCATCGTT 222828 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 |||||| | | | ||| || | |||| || ||| | | || || || ||| Sbjct 222829 CTAGAAAATCTCGCTGTTCGCTTCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTT 222888 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| ||||| || ||||| || || || ||||| ||||| || | || Sbjct 222889 TATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAA 222948 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || || || |||||| ||| || | || | || | || | ||||| || || Sbjct 222949 ACTTATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCG 223008 Query 44065 TGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 |||| |||| ||||| || ||||| | |||||||| | || ||||| Sbjct 223009 TGCGTGGCTAAA---AAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTT 223065 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | ||||| | |||| || || || |||||||| || || || || |||| | Sbjct 223066 GCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCA-GTTTCTG 223124 Query 44183 -GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || |||||||||||||| || || || || |||||||| || || || ||||| ||||| Sbjct 223125 TGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTT 223184 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||| |||||||| | |||||||| |||||||||||| Sbjct 223185 GATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 223227 >seq28581 Length=397638 Score = 102 bits (112), Expect = 6e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 |||||| ||||| | |||| || || || |||||||| || || || || | Sbjct 34245 CTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTT 34186 Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | |||| | |||||||||||||| || || || || |||||||| || || || ||||| Sbjct 34185 TCTGCG-CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAAC 34127 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| || ||| |||||||| | |||||||| |||||||||||| Sbjct 34126 GAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 34079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397311886304755