Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7139 134 2e-26 seq27182 131 2e-25 seq25332 98.7 1e-15 seq19704 98.7 1e-15 seq21511 93.3 5e-14 seq12755 89.7 6e-13 seq8664 89.7 6e-13 seq23340 82.4 9e-11 seq216 82.4 9e-11 >seq7139 Length=440615 Score = 134 bits (148), Expect = 2e-26 Identities = 252/365 (69%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 160780 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 160839 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 160840 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 160899 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 160900 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 160959 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764 |||||| ||||| | |||||||| || || ||| | | | | ||| ||| |||| Sbjct 160960 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 161018 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || || || || |||||||||||||| || ||||| | | ||||| || Sbjct 161019 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATG 161077 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || ||| || ||| || |||||| ||||| || || ||||||||||| || || Sbjct 161078 GAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 161137 Query 9884 CCTGG 9888 || || Sbjct 161138 CCAGG 161142 >seq27182 Length=171535 Score = 131 bits (144), Expect = 2e-25 Identities = 251/365 (69%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 138778 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 138837 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 138838 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 138897 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 138898 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 138957 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764 |||||| ||||| | |||||||| || || ||| | | | | ||| ||| |||| Sbjct 138958 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 139016 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || || || || |||||||||||||| || ||||| | | | ||| || Sbjct 139017 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA-ATG 139075 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || ||| || ||| || |||||| ||||| || || ||||||||||| || || Sbjct 139076 GAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 139135 Query 9884 CCTGG 9888 || || Sbjct 139136 CCAGG 139140 >seq25332 Length=434290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198 |||| |||| || |||||||||| ||||||||||||||| | ||| |||| || | Sbjct 185953 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAAGT- 185895 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || || |||| || || ||||||| ||| | || || | || |||| Sbjct 185894 TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTC 185836 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 || | | ||||||||||||| | | || || ||| |||||| ||| | ||| | Sbjct 185835 ATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTA 185776 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 185775 CTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 185729 >seq19704 Length=164701 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| || |||||||||| ||||||||||||||| | ||| || | || | | Sbjct 135270 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAAGTT 135329 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || || ||||||| ||| | || || | || ||||| Sbjct 135330 CAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTCA 135388 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | | | ||||||||||||| | | || || ||| |||||| ||| | ||| | Sbjct 135389 TAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTAC 135448 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 135449 TCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 135494 >seq21511 Length=123759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 307/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || ||| | ||| || || || ||||||| || || || | | | ||| Sbjct 121728 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 121669 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 121668 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 121612 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | || |||| || |||||||||||||| ||||| || | || Sbjct 121611 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 121552 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 9790 ||| ||| | || | ||| || |||| || || || | || || || ||| Sbjct 121551 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 121494 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||||||| | || | || | ||| | ||| || || | ||| || Sbjct 121493 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 121434 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 |||||||| ||| || | |||||||| || ||||| || || || | ||| Sbjct 121433 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 121374 Query 9911 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 ||||| |||| ||| || | || | | ||| |||| ||||| || ||||| | Sbjct 121373 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 121316 Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 |||| || || | ||||| | ||||| || | |||||| |||| Sbjct 121315 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 121267 >seq12755 Length=243795 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| || ||| ||||| |||||||||| |||| | ||||| | | | | Sbjct 39690 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 39749 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || ||| | ||||| ||| | || || | || ||||| Sbjct 39750 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCA 39808 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 39809 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 39868 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 39869 TCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCAA 39914 >seq8664 Length=49552 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| || ||| ||||| |||||||||| |||| | ||||| | | | | Sbjct 44686 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 44745 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || ||| | ||||| ||| | || || | || ||||| Sbjct 44746 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCA 44804 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 44805 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 44864 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 44865 TCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCAA 44910 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| | ||| ||||| |||||||||| |||| | ||||| | | | | Sbjct 49111 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 49170 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || ||| ||||||| ||| | || || | || ||||| Sbjct 49171 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCA 49229 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 49230 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 49289 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 49290 TCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCAA 49335 >seq23340 Length=555426 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187 ||||| ||| ||| |||| ||| || |||| | |||||||| |||| ||||||||| Sbjct 1088 GTTACTGAAATTGTAACCAGAAATCTTAACAAAATTATTGATGTTAATTACTACCCCGTT 1147 Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247 || ||||| | ||| ||| || | || | ||||||||| | || || |||||||| Sbjct 1148 GAAACTGCCAAAAGATCAAATTTGCGTCATAGGCCAATTGGTATTGGAGTGCAGGGTCTT 1207 Query 105248 GCGGATGTATTCATTCTTTGTCGCCA-CGCATTTGATTC 105285 || || ||||| |||| | | || || |||||||| Sbjct 1208 GCAGACACATTCA-TCTTACTTGGCATGGCCTTTGATTC 1245 >seq216 Length=206475 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||| | ||||| || || || || | ||||||||| || Sbjct 161969 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 162026 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | || | || || ||||| |||||||| ||||| || ||| Sbjct 162027 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 162086 Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || | |||||| || ||| || | ||||| ||| | ||||| | Sbjct 162087 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 162141 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 162142 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 162201 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || | ||||| || | |||||||| || ||||| || Sbjct 162202 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTGCCGGTACCAGG 162244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583043892599240