Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq7139 134 2e-26
seq27182 131 2e-25
seq25332 98.7 1e-15
seq19704 98.7 1e-15
seq21511 93.3 5e-14
seq12755 89.7 6e-13
seq8664 89.7 6e-13
seq23340 82.4 9e-11
seq216 82.4 9e-11
>seq7139
Length=440615
Score = 134 bits (148), Expect = 2e-26
Identities = 252/365 (69%), Gaps = 4/365 (1%)
Strand=Plus/Plus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || ||||| | | | ||| |||||| || ||| | | || || || ||
Sbjct 160780 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 160839
Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645
|| || | ||||| || | | || ||||||||||| || |||||||| |||||||
Sbjct 160840 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 160899
Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705
|||||| || | ||||||||| || | ||||| | | ||| ||| |||||
Sbjct 160900 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 160959
Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764
|||||| ||||| | |||||||| || || ||| | | | | ||| ||| ||||
Sbjct 160960 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 161018
Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824
| || || || || || |||||||||||||| || ||||| | | ||||| ||
Sbjct 161019 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATG 161077
Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883
| || ||| || ||| || |||||| ||||| || || ||||||||||| || ||
Sbjct 161078 GAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 161137
Query 9884 CCTGG 9888
|| ||
Sbjct 161138 CCAGG 161142
>seq27182
Length=171535
Score = 131 bits (144), Expect = 2e-25
Identities = 251/365 (69%), Gaps = 4/365 (1%)
Strand=Plus/Plus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || ||||| | | | ||| |||||| || ||| | | || || || ||
Sbjct 138778 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 138837
Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645
|| || | ||||| || | | || ||||||||||| || |||||||| |||||||
Sbjct 138838 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 138897
Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705
|||||| || | ||||||||| || | ||||| | | ||| ||| |||||
Sbjct 138898 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 138957
Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764
|||||| ||||| | |||||||| || || ||| | | | | ||| ||| ||||
Sbjct 138958 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 139016
Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824
| || || || || || |||||||||||||| || ||||| | | | ||| ||
Sbjct 139017 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA-ATG 139075
Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883
| || ||| || ||| || |||||| ||||| || || ||||||||||| || ||
Sbjct 139076 GAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 139135
Query 9884 CCTGG 9888
|| ||
Sbjct 139136 CCAGG 139140
>seq25332
Length=434290
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198
|||| |||| || |||||||||| ||||||||||||||| | ||| |||| || |
Sbjct 185953 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAAGT- 185895
Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258
|| | || || || |||| || || ||||||| ||| | || || | || ||||
Sbjct 185894 TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTC 185836
Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318
|| | | ||||||||||||| | | || || ||| |||||| ||| | ||| |
Sbjct 185835 ATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTA 185776
Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| || | || || || ||||||||||| || ||||| || |||
Sbjct 185775 CTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 185729
>seq19704
Length=164701
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199
|||| |||| || |||||||||| ||||||||||||||| | ||| || | || | |
Sbjct 135270 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAAGTT 135329
Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259
| | || || || |||| || || ||||||| ||| | || || | || |||||
Sbjct 135330 CAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTCA 135388
Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319
| | | ||||||||||||| | | || || ||| |||||| ||| | ||| |
Sbjct 135389 TAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTAC 135448
Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| || | || || || ||||||||||| || ||||| || |||
Sbjct 135449 TCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 135494
>seq21511
Length=123759
Score = 93.3 bits (102), Expect = 5e-14
Identities = 307/469 (65%), Gaps = 14/469 (3%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615
||| || || ||| | ||| || || || ||||||| || || || | | | |||
Sbjct 121728 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 121669
Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675
||||||||| || ||||| || || || | |||||| |||| |||||||||| ||
Sbjct 121668 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 121612
Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
|||| |||| | | || |||| || |||||||||||||| ||||| || | ||
Sbjct 121611 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 121552
Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 9790
||| ||| | || | ||| || |||| || || || | || || || |||
Sbjct 121551 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 121494
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850
||||||||||| | || | || | ||| | ||| || || | ||| ||
Sbjct 121493 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 121434
Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910
|||||||| ||| || | |||||||| || ||||| || || || | |||
Sbjct 121433 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 121374
Query 9911 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968
||||| |||| ||| || | || | | ||| |||| ||||| || ||||| |
Sbjct 121373 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 121316
Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017
|||| || || | ||||| | ||||| || | |||||| ||||
Sbjct 121315 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 121267
>seq12755
Length=243795
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199
|||| |||| || ||| ||||| |||||||||| |||| | ||||| | | | |
Sbjct 39690 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 39749
Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259
| | || || || |||| || ||| | ||||| ||| | || || | || |||||
Sbjct 39750 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCA 39808
Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319
| ||| ||||||||||||| | | || || ||| |||||| ||| | |||||
Sbjct 39809 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 39868
Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| || | || || || ||||||||||| || ||||| || |||
Sbjct 39869 TCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCAA 39914
>seq8664
Length=49552
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199
|||| |||| || ||| ||||| |||||||||| |||| | ||||| | | | |
Sbjct 44686 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 44745
Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259
| | || || || |||| || ||| | ||||| ||| | || || | || |||||
Sbjct 44746 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCA 44804
Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319
| ||| ||||||||||||| | | || || ||| |||||| ||| | |||||
Sbjct 44805 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 44864
Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| || | || || || ||||||||||| || ||||| || |||
Sbjct 44865 TCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCAA 44910
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199
|||| |||| | ||| ||||| |||||||||| |||| | ||||| | | | |
Sbjct 49111 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 49170
Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259
| | || || || |||| || ||| ||||||| ||| | || || | || |||||
Sbjct 49171 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCA 49229
Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319
| ||| ||||||||||||| | | || || ||| |||||| ||| | |||||
Sbjct 49230 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 49289
Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| || | || || || ||||||||||| || ||||| || |||
Sbjct 49290 TCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCAA 49335
>seq23340
Length=555426
Score = 82.4 bits (90), Expect = 9e-11
Identities = 115/159 (72%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187
||||| ||| ||| |||| ||| || |||| | |||||||| |||| |||||||||
Sbjct 1088 GTTACTGAAATTGTAACCAGAAATCTTAACAAAATTATTGATGTTAATTACTACCCCGTT 1147
Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247
|| ||||| | ||| ||| || | || | ||||||||| | || || ||||||||
Sbjct 1148 GAAACTGCCAAAAGATCAAATTTGCGTCATAGGCCAATTGGTATTGGAGTGCAGGGTCTT 1207
Query 105248 GCGGATGTATTCATTCTTTGTCGCCA-CGCATTTGATTC 105285
|| || ||||| |||| | | || || ||||||||
Sbjct 1208 GCAGACACATTCA-TCTTACTTGGCATGGCCTTTGATTC 1245
>seq216
Length=206475
Score = 82.4 bits (90), Expect = 9e-11
Identities = 189/283 (67%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| |||| | ||||| || || || || | ||||||||| ||
Sbjct 161969 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 162026
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | | | ||||| | | || | || || ||||| |||||||| ||||| || |||
Sbjct 162027 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 162086
Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785
|| || | |||||| || ||| || | ||||| ||| | ||||| |
Sbjct 162087 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 162141
Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845
| ||||| |||| ||||||||| | | || | ||| || ||||| || | ||
Sbjct 162142 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 162201
Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| || || | ||||| || | |||||||| || ||||| ||
Sbjct 162202 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTGCCGGTACCAGG 162244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583043892599240
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