Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq22586 116 4e-21 >seq22586 Length=877411 Score = 116 bits (128), Expect = 4e-21 Identities = 243/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGT 59823 || || |||||||| ||||||| || | || || | || || | ||| | | ||| Sbjct 444185 AAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATG-GTTTCCAAATCGCT-ATCGAAA 444128 Query 59824 CTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA 59883 |||||||||||||| |||| ||| | |||| | | | || ||| | || || | Sbjct 444127 ATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAA 444068 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 || |||| ||||| ||||| |||||| || || ||||||| || |||| Sbjct 444067 AGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGG 444008 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | ||| | ||||| || | |||| | | || || |||| | || |||||||| ||| Sbjct 444007 CTATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGC 443949 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 443948 GTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGG 443889 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 443888 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 443833 Score = 116 bits (128), Expect = 4e-21 Identities = 243/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGT 59823 || || |||||||| ||||||| || | || || | || || | ||| | | ||| Sbjct 447320 AAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATG-GTTTCCAAATCGCT-ATCGAAA 447263 Query 59824 CTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA 59883 |||||||||||||| |||| ||| | |||| | | | || ||| | || || | Sbjct 447262 ATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAA 447203 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 || |||| ||||| ||||| |||||| || || ||||||| || |||| Sbjct 447202 AGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGG 447143 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | ||| | ||||| || | |||| | | || || |||| | || |||||||| ||| Sbjct 447142 CTATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGC 447084 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 447083 GTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGG 447024 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 447023 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 446968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548320810483440