Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq29527 89.7 6e-13
seq25237 89.7 6e-13
seq20251 87.8 2e-12
seq17726 87.8 2e-12
seq25870 86.0 7e-12
seq10776 84.2 2e-11
seq6854 84.2 2e-11
seq25758 82.4 8e-11
seq18007 82.4 8e-11
>seq29527
Length=140246
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 112420 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 112479
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 112480 TGAGCTACGAAAGC 112493
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 125036 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 125095
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 125096 TGAGCTACGAAAGC 125109
>seq25237
Length=283651
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 204299 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 204240
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 204239 TGAGCTACGAAAGC 204226
>seq20251
Length=234105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| |||||||||||||||||||| |||||| |||||
Sbjct 220952 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGATGCTCTAACCAAC 221011
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 221012 TGAGCTACGAAAGCA 221026
>seq17726
Length=230450
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| |||||||||||||||||| |||||||| |||||
Sbjct 108360 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACCAAC 108301
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 108300 TGAGCTACGAAAGCA 108286
>seq25870
Length=252919
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| || |||| ||||||||||||||||||||||||||| |||||
Sbjct 18352 TGCTTTCGTTGAGAGCCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18293
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 18292 TGAGCTACGAAAGC 18279
>seq10776
Length=55600
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2411 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2352
Query 79684 TGAGCTACGAAAGCAAAA 79701
||||||| |||||| |||
Sbjct 2351 TGAGCTATGAAAGCTAAA 2334
>seq6854
Length=164033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||
Sbjct 81304 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 81245
Query 79682 ATTGAGCTACGAAAGC 79697
| ||||||| ||||||
Sbjct 81244 ACTGAGCTATGAAAGC 81229
>seq25758
Length=435750
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| || |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 310623 TGCTCTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 310682
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 310683 TGAGCTACGAAAGCA 310697
>seq18007
Length=116708
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 83335 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 83394
Query 79683 TTGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 83395 CTGAGCTATGAAAGC 83409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547012497209800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |