Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29527 89.7 6e-13 seq25237 89.7 6e-13 seq20251 87.8 2e-12 seq17726 87.8 2e-12 seq25870 86.0 7e-12 seq10776 84.2 2e-11 seq6854 84.2 2e-11 seq25758 82.4 8e-11 seq18007 82.4 8e-11 >seq29527 Length=140246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 112420 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 112479 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 112480 TGAGCTACGAAAGC 112493 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 125036 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 125095 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 125096 TGAGCTACGAAAGC 125109 >seq25237 Length=283651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 204299 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 204240 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 204239 TGAGCTACGAAAGC 204226 >seq20251 Length=234105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| |||||||||||||||||||| |||||| ||||| Sbjct 220952 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGATGCTCTAACCAAC 221011 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 221012 TGAGCTACGAAAGCA 221026 >seq17726 Length=230450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| |||||||||||||||||| |||||||| ||||| Sbjct 108360 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACCAAC 108301 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 108300 TGAGCTACGAAAGCA 108286 >seq25870 Length=252919 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| || |||| ||||||||||||||||||||||||||| ||||| Sbjct 18352 TGCTTTCGTTGAGAGCCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18293 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 18292 TGAGCTACGAAAGC 18279 >seq10776 Length=55600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2411 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2352 Query 79684 TGAGCTACGAAAGCAAAA 79701 ||||||| |||||| ||| Sbjct 2351 TGAGCTATGAAAGCTAAA 2334 >seq6854 Length=164033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 81304 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 81245 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 81244 ACTGAGCTATGAAAGC 81229 >seq25758 Length=435750 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| || |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 310623 TGCTCTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 310682 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 310683 TGAGCTACGAAAGCA 310697 >seq18007 Length=116708 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 83335 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 83394 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 83395 CTGAGCTATGAAAGC 83409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547012497209800