Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq14353 107 2e-18 seq5610 96.9 3e-15 seq2874 91.5 1e-13 seq25104 89.7 4e-13 seq16075 89.7 4e-13 seq15267 87.8 2e-12 seq20094 84.2 2e-11 seq2343 82.4 7e-11 >seq14353 Length=57137 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| ||||| || ||||| || ||||| |||| | Sbjct 55093 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCA 55034 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| || | | ||||||||| |||||| | || ||| || Sbjct 55033 TCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCAGGTGGG-ATGCCCTCCTT 54975 Query 39189 GTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | | | | || | | | ||||| |||||| || | |||| Sbjct 54974 GTCC-TGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGA 54916 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || |||||||| |||||||| ||||| Sbjct 54915 TGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 54879 >seq5610 Length=141783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||||||||| || || | Sbjct 62192 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACC 62133 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 62132 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 62074 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 62073 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 62015 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 62014 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 61974 >seq2874 Length=261101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||| ||||| || || | Sbjct 215837 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCGACC 215778 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 215777 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 215719 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 215718 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 215660 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 215659 ATGGTCTTGCCGGTAAGGGTTTTGACAAAGATCTGCATCTT 215619 >seq25104 Length=148940 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| || | | | || ||| Sbjct 36284 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 36225 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 36224 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 36166 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| |||||| |||| || || | Sbjct 36165 AATCTTGGCTTTCACATTATCAATGGTATCCGAGCT---CTCCACCTCCAAGGTAATTGT 36109 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 36108 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 36076 >seq16075 Length=278268 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| |||| | | || ||| Sbjct 276230 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 276289 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 276290 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 276348 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| ||| || |||| || || | Sbjct 276349 AATCTTGGCTTTCACATTGTCAATGGTATC---CGAACTCTCGACCTCCAAGGTAATTGT 276405 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 276406 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 276438 >seq15267 Length=425869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| || || || || || || ||||| Sbjct 125055 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 124996 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || ||||| ||||| ||||| || || ||||| ||||||| || Sbjct 124995 AAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 124936 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||| || ||||| | | | || ||| ||||| || Sbjct 124935 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 124876 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||||||||||||| Sbjct 124875 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 124825 >seq20094 Length=687087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| || || || || || || ||||| Sbjct 494285 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 494344 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || ||||| || || ||||| || || ||||| ||||||| || Sbjct 494345 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 494404 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||| || ||||| | | | || ||| ||||| || Sbjct 494405 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 494464 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||||||||||||| Sbjct 494465 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 494515 >seq2343 Length=47720 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || |||||||| | || || |||| ||||||||||| || || || Sbjct 23091 CTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 23032 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | || || || || |||||| || | ||| Sbjct 23031 GATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTT-GGTCTTCACGT 22973 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| ||| || || | ||||| | || || || || || |||| Sbjct 22972 TGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTCTTAA 22913 Query 39272 CAAAGATTTGCATCTTT 39288 | ||||| ||||||||| Sbjct 22912 CGAAGATCTGCATCTTT 22896 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || || || || || ||||| |||||||| | || || |||| || Sbjct 23564 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 23505 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || || || || || || ||||| |||||||| | || | || || ||||| | Sbjct 23504 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 23445 Query 39196 ATTTTCTGTTTGAGCGTCGCC-ACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||||| ||| | ||| | | | ||| || |||| || || || | ||||| | Sbjct 23444 ATTTTGGCTTTCA-CGTTGTCGATCGTGTCAGAGCTC---TCGACCTCGAGAGTGATCGT 23389 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||||||| ||||| ||||| |||||||||||| Sbjct 23388 CTTTCCCGTAAGCGTCTTAACGAAGATTTGCATC 23355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429389850926663