Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq14353 107 2e-18
seq5610 96.9 3e-15
seq2874 91.5 1e-13
seq25104 89.7 4e-13
seq16075 89.7 4e-13
seq15267 87.8 2e-12
seq20094 84.2 2e-11
seq2343 82.4 7e-11
>seq14353
Length=57137
Score = 107 bits (118), Expect = 2e-18
Identities = 157/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| ||||||||||| || || ||| ||||| || ||||| || ||||| |||| |
Sbjct 55093 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCA 55034
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188
|| ||||||||||| || ||||| || | | ||||||||| |||||| | || ||| ||
Sbjct 55033 TCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCAGGTGGG-ATGCCCTCCTT 54975
Query 39189 GTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| | | | | | || | | | ||||| |||||| || | ||||
Sbjct 54974 GTCC-TGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGA 54916
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||||| || |||||||| |||||||| |||||
Sbjct 54915 TGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 54879
>seq5610
Length=141783
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
|||||| || | || || ||| ||||| || || |||||||||||||| || || |
Sbjct 62192 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACC 62133
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187
||| || ||||||||||| || || || |||||||||||||| |||||| | || || |
Sbjct 62132 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 62074
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246
|||| ||| || |||| ||| | | | || ||| || || || | ||
Sbjct 62073 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 62015
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| | || || || || ||||| |||||||| ||||||||
Sbjct 62014 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 61974
>seq2874
Length=261101
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
|||||| || | || || ||| ||||| || || |||||||| ||||| || || |
Sbjct 215837 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCGACC 215778
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187
||| || ||||||||||| || || || |||||||||||||| |||||| | || || |
Sbjct 215777 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 215719
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246
|||| ||| || |||| ||| | | | || ||| || || || | ||
Sbjct 215718 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 215660
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| | || || || || ||||| |||||||| ||||||||
Sbjct 215659 ATGGTCTTGCCGGTAAGGGTTTTGACAAAGATCTGCATCTT 215619
>seq25104
Length=148940
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || ||| || || ||||||||||||||||| || | | | || |||
Sbjct 36284 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 36225
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|| ||||| || ||||| || | | || ||||| |||||| | | |||||||||
Sbjct 36224 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 36166
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
|| || ||| | | | | ||||| ||| |||||| |||| || || |
Sbjct 36165 AATCTTGGCTTTCACATTATCAATGGTATCCGAGCT---CTCCACCTCCAAGGTAATTGT 36109
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || ||||| ||||||||||||||
Sbjct 36108 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 36076
>seq16075
Length=278268
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || ||| || || ||||||||||||||||| |||| | | || |||
Sbjct 276230 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 276289
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|| ||||| || ||||| || | | || ||||| |||||| | | |||||||||
Sbjct 276290 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 276348
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251
|| || ||| | | | | ||||| ||| ||| || |||| || || |
Sbjct 276349 AATCTTGGCTTTCACATTGTCAATGGTATC---CGAACTCTCGACCTCCAAGGTAATTGT 276405
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || ||||| ||||||||||||||
Sbjct 276406 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 276438
>seq15267
Length=425869
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || | || | ||| | ||| || ||| || || || || || || |||||
Sbjct 125055 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 124996
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
| || || |||| || ||||| ||||| ||||| || || ||||| ||||||| ||
Sbjct 124995 AAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 124936
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || || ||||| ||| || ||||| | | | || ||| ||||| ||
Sbjct 124935 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 124876
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
|| | || || | || ||||| || ||||| || |||||||||||||||
Sbjct 124875 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 124825
>seq20094
Length=687087
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || | || | ||| | ||| || ||| || || || || || || |||||
Sbjct 494285 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 494344
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
| || || |||| || ||||| || || ||||| || || ||||| ||||||| ||
Sbjct 494345 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 494404
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || || ||||| ||| || ||||| | | | || ||| ||||| ||
Sbjct 494405 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 494464
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
|| | || || | || ||||| || ||||| || |||||||||||||||
Sbjct 494465 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 494515
>seq2343
Length=47720
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| ||||| || || |||||||| | || || |||| ||||||||||| || || ||
Sbjct 23091 CTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 23032
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| |||||||||||||| | || | || || || || |||||| || | |||
Sbjct 23031 GATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTT-GGTCTTCACGT 22973
Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271
| | | ||| ||| ||| || || | ||||| | || || || || || ||||
Sbjct 22972 TGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTCTTAA 22913
Query 39272 CAAAGATTTGCATCTTT 39288
| ||||| |||||||||
Sbjct 22912 CGAAGATCTGCATCTTT 22896
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| || || || || || ||||| |||||||| | || || |||| ||
Sbjct 23564 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 23505
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|| || || || || || || ||||| |||||||| | || | || || ||||| |
Sbjct 23504 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 23445
Query 39196 ATTTTCTGTTTGAGCGTCGCC-ACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
||||| ||| | ||| | | | ||| || |||| || || || | ||||| |
Sbjct 23444 ATTTTGGCTTTCA-CGTTGTCGATCGTGTCAGAGCTC---TCGACCTCGAGAGTGATCGT 23389
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|||||||| ||||| ||||| ||||||||||||
Sbjct 23388 CTTTCCCGTAAGCGTCTTAACGAAGATTTGCATC 23355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429389850926663
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