Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 203 3e-47
seq22586 138 1e-27
seq28581 129 5e-25
>seq29212
Length=358297
Score = 203 bits (224), Expect = 3e-47
Identities = 549/827 (66%), Gaps = 15/827 (2%)
Strand=Plus/Minus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| ||||||||||| ||||| |||| || ||||| |||||| |||||||
Sbjct 223499 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 223440
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| |||| || ||||| ||| || || || |||| | | ||| || || || ||
Sbjct 223439 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 223380
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA-GCGC 4450
|| || || || || ||||| | || | ||| || |||| ||| | | |||| | | ||
Sbjct 223379 AACTCAATGTATTGACTCATCAACTCACCGTTCATCCCAACTAA-CGCGCAGGGAAGAGC 223321
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| | |||||| |||||| || || || | | ||| | || | ||
Sbjct 223320 GTCGCATACAAACTCCCTCTCTATATCCACCGCATCCCTCACTATTCCCTTCACGCGCTC 223261
Query 4511 TTTAGATGGTTTATTTACTA-AGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568
|| | | | || | ||| || | | ||| || || ||||| || ||||| | |
Sbjct 223260 TTCACTTAGCTT--TGACTGGAGGAGAGAGTACAGCAAGCAAGCAAAGTCGCAATGGAGA 223203
Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628
||||| |||| |||| ||||| || || |||||||| |||||||| || | ||||
Sbjct 223202 CCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTTT 223143
Query 4629 TTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686
|| | ||||||||| || | || || | |||||| |||||||||||||| || |
Sbjct 223142 TTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAA--ATATGCCTTCTACGCAAGCGA 223085
Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746
| || | ||| | | | | | |||| | | | | |||||||| || ||||| |
Sbjct 223084 AAGCGATTAACC--GTTCGGCAAAAGCT-TCGCCGCCGTCGATCCATTTCAAAGCCCAAT 223028
Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806
|||||||| |||||||| | || | |||||| || | |||||||
Sbjct 223027 CGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTCGG 222968
Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866
| |||| ||||||||| || | || || |||||||| ||||| || ||||| || |
Sbjct 222967 TGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCTCGA 222908
Query 4867 TAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925
| || || || ||||| ||||| ||| | || || | | ||| || || || ||
Sbjct 222907 TGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCCGCGATTTGGACCTCTTTCATGAAG 222849
Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985
| | | | ||||| || || || || || || || || || | ||||||
Sbjct 222848 CGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCGGCGAAGAAGGCAAGGACATGA 222789
Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045
|| |||| ||||||| | ||||| |||| |||||| || | ||| || | |
Sbjct 222788 CTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGAAGATCGGAAGAGAGA 222729
Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092
|||||||| || |||||||||| || ||||| ||||| || |||||
Sbjct 222728 TCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTATACAT 222682
>seq22586
Length=877411
Score = 138 bits (152), Expect = 1e-27
Identities = 550/855 (64%), Gaps = 13/855 (2%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| || ||||||||||| ||||| |||| ||||| || |||||| |||||||
Sbjct 443542 ACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGTTCCATCCAATCAAAT 443601
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| || ||||||| ||| | || || ||| | | ||| || || |||||
Sbjct 443602 GGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAACAACCGATCCGCTACG 443661
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450
|| || || ||||| ||||| | |||| ||| || |||| || | | |||| || ||
Sbjct 443662 AACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGAGC 443720
Query 4451 GTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508
|| || | ||||| ||||| || || || | | ||| || | |
Sbjct 443721 --ATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATCCCTCTCACGCGT 443778
Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567
|||| | | || | | || | | ||| || || || |||||||| || |
Sbjct 443779 TCTTCACTCAGCTT-TGACCGGAGGAGAGAGTACAGCAAGCAAGCGAAATCACAGTGGAG 443837
Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627
|||||| |||| || | ||||| || || ||||||||||||||||| || |||||
Sbjct 443838 ACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCCCCTCTT 443897
Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687
||| | ||||||||| || || || || || || || || |||||| |||||
Sbjct 443898 TTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCAAGCAAA 443957
Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747
|| | ||| || |||| | | || | | | |||||||| | ||||| |
Sbjct 443958 AGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCGTCGATCCATTTCATAGCCCACTC 444014
Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807
|||||||| || ||||| | || | || ||| || | | ||||||
Sbjct 444015 GGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGTTCTTTTCATC 444074
Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867
| |||| || ||||| || | || || || ||||| || || || |||||||| ||
Sbjct 444075 GGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGATATTTTCGAT 444134
Query 4868 AGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||| || || || || | ||||||| | || || | | || || || || || |
Sbjct 444135 AGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGATCTGGACCTCTTTCATGAACC 444193
Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986
| | | ||| || ||||| || || ||| || ||||| || | ||| |||
Sbjct 444194 GAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGCGAGAACGTGAC 444253
Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046
|| |||| || || || | | || ||| |||||| | | ||| || | ||
Sbjct 444254 TAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATCGGAAGACAGAT 444313
Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106
| ||||| || | ||||||||||||||||| ||||| |||||||| ||| | || |
Sbjct 444314 CGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCCATACTTCTG 444373
Query 5107 GATACTGAATCGGAA 5121
| || || |||||||
Sbjct 444374 GGTATTGGATCGGAA 444388
Score = 138 bits (152), Expect = 1e-27
Identities = 550/855 (64%), Gaps = 13/855 (2%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| || ||||||||||| ||||| |||| ||||| || |||||| |||||||
Sbjct 446677 ACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGTTCCATCCAATCAAAT 446736
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| || ||||||| ||| | || || ||| | | ||| || || |||||
Sbjct 446737 GGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAACAACCGATCCGCTACG 446796
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450
|| || || ||||| ||||| | |||| ||| || |||| || | | |||| || ||
Sbjct 446797 AACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGAGC 446855
Query 4451 GTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508
|| || | ||||| ||||| || || || | | ||| || | |
Sbjct 446856 --ATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATCCCTCTCACGCGT 446913
Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567
|||| | | || | | || | | ||| || || || |||||||| || |
Sbjct 446914 TCTTCACTCAGCTT-TGACCGGAGGAGAGAGTACAGCAAGCAAGCGAAATCACAGTGGAG 446972
Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627
|||||| |||| || | ||||| || || ||||||||||||||||| || |||||
Sbjct 446973 ACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCCCCTCTT 447032
Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687
||| | ||||||||| || || || || || || || || |||||| |||||
Sbjct 447033 TTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCAAGCAAA 447092
Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747
|| | ||| || |||| | | || | | | |||||||| | ||||| |
Sbjct 447093 AGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCGTCGATCCATTTCATAGCCCACTC 447149
Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807
|||||||| || ||||| | || | || ||| || | | ||||||
Sbjct 447150 GGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGTTCTTTTCATC 447209
Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867
| |||| || ||||| || | || || || ||||| || || || |||||||| ||
Sbjct 447210 GGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGATATTTTCGAT 447269
Query 4868 AGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||| || || || || | ||||||| | || || | | || || || || || |
Sbjct 447270 AGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGATCTGGACCTCTTTCATGAACC 447328
Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986
| | | ||| || ||||| || || ||| || ||||| || | ||| |||
Sbjct 447329 GAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGCGAGAACGTGAC 447388
Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046
|| |||| || || || | | || ||| |||||| | | ||| || | ||
Sbjct 447389 TAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATCGGAAGACAGAT 447448
Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106
| ||||| || | ||||||||||||||||| ||||| |||||||| ||| | || |
Sbjct 447449 CGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCCATACTTCTG 447508
Query 5107 GATACTGAATCGGAA 5121
| || || |||||||
Sbjct 447509 GGTATTGGATCGGAA 447523
>seq28581
Length=397638
Score = 129 bits (142), Expect = 5e-25
Identities = 336/502 (67%), Gaps = 13/502 (3%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| ||||||||||| ||||| |||| || ||||| |||||| |||||||
Sbjct 33807 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 33866
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| |||| || ||||| ||| || || || |||| | | ||| || || || ||
Sbjct 33867 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 33926
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450
|| || || || || ||||| | || | || || |||| ||| | || ||| || ||
Sbjct 33927 AACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAACGCGCA-AGGAAGAGC 33985
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| | |||||| |||||| || || || | | ||| | || | ||
Sbjct 33986 GTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATTCCCTTCACGCGCTC 34045
Query 4511 TTTAGATGGTTTATTTACT-AAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568
|| | | | || | ||| ||| | | ||| || || ||||| || ||||| | |
Sbjct 34046 TTCACTTAGCTT--TGACTGAAGGAGAGAGTACAGCAAGCAAGCAAAGTCGCAATGGAGA 34103
Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628
||||| |||| |||| ||||| || || |||||||| |||||||| || | ||||
Sbjct 34104 CCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTTT 34163
Query 4629 TTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686
|| | ||||||||| ||| | || || | |||||| |||||||||||||| || |
Sbjct 34164 TTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAA--ATATGCCTTCTACGCAAGCGA 34221
Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746
| || | ||| | | | | | |||| | | | | |||||||| || ||||| |
Sbjct 34222 AAGCGATTAACC--GTTCGGCAAAAGCT-TCGCGGCCGTCGATCCATTTGAAAGCCCAAT 34278
Query 4747 TAGCTTTTTTCTTAACGCACGG 4768
|||||||| ||||||||
Sbjct 34279 CGGCTTTTTTAGCCACGCACGG 34300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426894755952083
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