Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq29212 203 3e-47 seq22586 138 1e-27 seq28581 129 5e-25 >seq29212 Length=358297 Score = 203 bits (224), Expect = 3e-47 Identities = 549/827 (66%), Gaps = 15/827 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| ||||| |||| || ||||| |||||| ||||||| Sbjct 223499 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 223440 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || |||| || ||||| ||| || || || |||| | | ||| || || || || Sbjct 223439 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 223380 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA-GCGC 4450 || || || || || ||||| | || | ||| || |||| ||| | | |||| | | || Sbjct 223379 AACTCAATGTATTGACTCATCAACTCACCGTTCATCCCAACTAA-CGCGCAGGGAAGAGC 223321 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| |||||| || || || | | ||| | || | || Sbjct 223320 GTCGCATACAAACTCCCTCTCTATATCCACCGCATCCCTCACTATTCCCTTCACGCGCTC 223261 Query 4511 TTTAGATGGTTTATTTACTA-AGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568 || | | | || | ||| || | | ||| || || ||||| || ||||| | | Sbjct 223260 TTCACTTAGCTT--TGACTGGAGGAGAGAGTACAGCAAGCAAGCAAAGTCGCAATGGAGA 223203 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| |||| |||| ||||| || || |||||||| |||||||| || | |||| Sbjct 223202 CCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTTT 223143 Query 4629 TTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 || | ||||||||| || | || || | |||||| |||||||||||||| || | Sbjct 223142 TTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAA--ATATGCCTTCTACGCAAGCGA 223085 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || | ||| | | | | | |||| | | | | |||||||| || ||||| | Sbjct 223084 AAGCGATTAACC--GTTCGGCAAAAGCT-TCGCCGCCGTCGATCCATTTCAAAGCCCAAT 223028 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806 |||||||| |||||||| | || | |||||| || | ||||||| Sbjct 223027 CGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTCGG 222968 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | |||| ||||||||| || | || || |||||||| ||||| || ||||| || | Sbjct 222967 TGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCTCGA 222908 Query 4867 TAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 | || || || ||||| ||||| ||| | || || | | ||| || || || || Sbjct 222907 TGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCCGCGATTTGGACCTCTTTCATGAAG 222849 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | | | | ||||| || || || || || || || || || | |||||| Sbjct 222848 CGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCGGCGAAGAAGGCAAGGACATGA 222789 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || |||| ||||||| | ||||| |||| |||||| || | ||| || | | Sbjct 222788 CTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGAAGATCGGAAGAGAGA 222729 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 |||||||| || |||||||||| || ||||| ||||| || ||||| Sbjct 222728 TCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTATACAT 222682 >seq22586 Length=877411 Score = 138 bits (152), Expect = 1e-27 Identities = 550/855 (64%), Gaps = 13/855 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| || ||||||||||| ||||| |||| ||||| || |||||| ||||||| Sbjct 443542 ACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGTTCCATCCAATCAAAT 443601 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || ||||||| ||| | || || ||| | | ||| || || ||||| Sbjct 443602 GGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAACAACCGATCCGCTACG 443661 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450 || || || ||||| ||||| | |||| ||| || |||| || | | |||| || || Sbjct 443662 AACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGAGC 443720 Query 4451 GTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || || | ||||| ||||| || || || | | ||| || | | Sbjct 443721 --ATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATCCCTCTCACGCGT 443778 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567 |||| | | || | | || | | ||| || || || |||||||| || | Sbjct 443779 TCTTCACTCAGCTT-TGACCGGAGGAGAGAGTACAGCAAGCAAGCGAAATCACAGTGGAG 443837 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 |||||| |||| || | ||||| || || ||||||||||||||||| || ||||| Sbjct 443838 ACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCCCCTCTT 443897 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 ||| | ||||||||| || || || || || || || || |||||| ||||| Sbjct 443898 TTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCAAGCAAA 443957 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 || | ||| || |||| | | || | | | |||||||| | ||||| | Sbjct 443958 AGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCGTCGATCCATTTCATAGCCCACTC 444014 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 |||||||| || ||||| | || | || ||| || | | |||||| Sbjct 444015 GGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGTTCTTTTCATC 444074 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 | |||| || ||||| || | || || || ||||| || || || |||||||| || Sbjct 444075 GGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGATATTTTCGAT 444134 Query 4868 AGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || | ||||||| | || || | | || || || || || | Sbjct 444135 AGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGATCTGGACCTCTTTCATGAACC 444193 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 | | | ||| || ||||| || || ||| || ||||| || | ||| ||| Sbjct 444194 GAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGCGAGAACGTGAC 444253 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 || |||| || || || | | || ||| |||||| | | ||| || | || Sbjct 444254 TAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATCGGAAGACAGAT 444313 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 | ||||| || | ||||||||||||||||| ||||| |||||||| ||| | || | Sbjct 444314 CGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCCATACTTCTG 444373 Query 5107 GATACTGAATCGGAA 5121 | || || ||||||| Sbjct 444374 GGTATTGGATCGGAA 444388 Score = 138 bits (152), Expect = 1e-27 Identities = 550/855 (64%), Gaps = 13/855 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| || ||||||||||| ||||| |||| ||||| || |||||| ||||||| Sbjct 446677 ACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGTTCCATCCAATCAAAT 446736 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || ||||||| ||| | || || ||| | | ||| || || ||||| Sbjct 446737 GGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAACAACCGATCCGCTACG 446796 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450 || || || ||||| ||||| | |||| ||| || |||| || | | |||| || || Sbjct 446797 AACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGAGC 446855 Query 4451 GTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || || | ||||| ||||| || || || | | ||| || | | Sbjct 446856 --ATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATCCCTCTCACGCGT 446913 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567 |||| | | || | | || | | ||| || || || |||||||| || | Sbjct 446914 TCTTCACTCAGCTT-TGACCGGAGGAGAGAGTACAGCAAGCAAGCGAAATCACAGTGGAG 446972 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 |||||| |||| || | ||||| || || ||||||||||||||||| || ||||| Sbjct 446973 ACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCCCCTCTT 447032 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 ||| | ||||||||| || || || || || || || || |||||| ||||| Sbjct 447033 TTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCAAGCAAA 447092 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 || | ||| || |||| | | || | | | |||||||| | ||||| | Sbjct 447093 AGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCGTCGATCCATTTCATAGCCCACTC 447149 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 |||||||| || ||||| | || | || ||| || | | |||||| Sbjct 447150 GGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGTTCTTTTCATC 447209 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 | |||| || ||||| || | || || || ||||| || || || |||||||| || Sbjct 447210 GGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGATATTTTCGAT 447269 Query 4868 AGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || | ||||||| | || || | | || || || || || | Sbjct 447270 AGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGATCTGGACCTCTTTCATGAACC 447328 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 | | | ||| || ||||| || || ||| || ||||| || | ||| ||| Sbjct 447329 GAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGCGAGAACGTGAC 447388 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 || |||| || || || | | || ||| |||||| | | ||| || | || Sbjct 447389 TAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATCGGAAGACAGAT 447448 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 | ||||| || | ||||||||||||||||| ||||| |||||||| ||| | || | Sbjct 447449 CGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCCATACTTCTG 447508 Query 5107 GATACTGAATCGGAA 5121 | || || ||||||| Sbjct 447509 GGTATTGGATCGGAA 447523 >seq28581 Length=397638 Score = 129 bits (142), Expect = 5e-25 Identities = 336/502 (67%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| ||||| |||| || ||||| |||||| ||||||| Sbjct 33807 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 33866 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || |||| || ||||| ||| || || || |||| | | ||| || || || || Sbjct 33867 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 33926 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || || || || ||||| | || | || || |||| ||| | || ||| || || Sbjct 33927 AACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAACGCGCA-AGGAAGAGC 33985 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| |||||| || || || | | ||| | || | || Sbjct 33986 GTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATTCCCTTCACGCGCTC 34045 Query 4511 TTTAGATGGTTTATTTACT-AAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568 || | | | || | ||| ||| | | ||| || || ||||| || ||||| | | Sbjct 34046 TTCACTTAGCTT--TGACTGAAGGAGAGAGTACAGCAAGCAAGCAAAGTCGCAATGGAGA 34103 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| |||| |||| ||||| || || |||||||| |||||||| || | |||| Sbjct 34104 CCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTTT 34163 Query 4629 TTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 || | ||||||||| ||| | || || | |||||| |||||||||||||| || | Sbjct 34164 TTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAA--ATATGCCTTCTACGCAAGCGA 34221 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || | ||| | | | | | |||| | | | | |||||||| || ||||| | Sbjct 34222 AAGCGATTAACC--GTTCGGCAAAAGCT-TCGCGGCCGTCGATCCATTTGAAAGCCCAAT 34278 Query 4747 TAGCTTTTTTCTTAACGCACGG 4768 |||||||| |||||||| Sbjct 34279 CGGCTTTTTTAGCCACGCACGG 34300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426894755952083