Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq5610 127 2e-24
seq2874 127 2e-24
seq9953 113 4e-20
seq25104 98.7 8e-16
seq16075 98.7 8e-16
seq12924 98.7 8e-16
seq8609 98.7 8e-16
seq2343 95.1 1e-14
seq15394 86.0 5e-12
seq481 86.0 5e-12
>seq5610
Length=141783
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||||||||| || |||||||||||||| || ||| |||| ||| | |
Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | | || || ||| ||| || || ||||| | || |||||
Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||||| || | ||| |||||||||||||||||| | ||| |||| ||||||||
Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327
|| || ||||| ||||| || || | || | ||||| || ||||||
Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 62660
>seq2874
Length=261101
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||||||||| || |||||||||||||| || ||| |||| ||| | |
Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | | || || ||| ||| || || ||||| | || |||||
Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||||| || | ||| |||||||||||||||||| | ||| |||| ||||||||
Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327
|| || ||||| ||||| || || | || | ||||| || ||||||
Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 216305
>seq9953
Length=604776
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| ||||| |||||||| || |||||||| || |||| ||| |
Sbjct 353726 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 353667
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | | | | | || || || ||| ||||||||||| |||| |||||
Sbjct 353666 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 353607
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||| | |||| || || ||||||||||||||| | ||| |||| ||||| |||
Sbjct 353606 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 353547
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || ||||| || || || | || |||||||| || |||||
Sbjct 353546 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 353500
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| ||||| |||||||| || |||||||| || |||| ||| |
Sbjct 354852 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 354793
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | | | | | || || || ||| ||||||||||| |||| |||||
Sbjct 354792 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 354733
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||| | |||| || || ||||||||||||||| | ||| |||| ||||| |||
Sbjct 354732 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 354673
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || ||||| || || || | || |||||||| || |||||
Sbjct 354672 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 354626
>seq25104
Length=148940
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| ||||||||||| | || || || || |||||| |||| ||| |
Sbjct 36076 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGCTCG 36135
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| || ||| ||||||||||| | || || |||
Sbjct 36136 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 36195
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||||| | |||| ||| || |||||| | |||||| | ||| | ||||||||||||
Sbjct 36196 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAAT 36255
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || || ||||| || ||||| || | || || || |||||
Sbjct 36256 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGTGGTGG 36302
>seq16075
Length=278268
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| ||||||||||| | || || || || |||||| |||| ||
Sbjct 276438 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 276379
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | | || ||| || ||| ||||||||||| | || || |||
Sbjct 276378 GATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 276319
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||||| | |||| ||| || |||||| | |||||| | |||| | ||||||||||||
Sbjct 276318 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAAT 276259
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || || ||||| || ||||| || | || || || |||||
Sbjct 276258 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGGGGTGG 276212
>seq12924
Length=310248
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || ||||| ||||| | || || |||||||| ||| | || |||| | |
Sbjct 59354 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 59413
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || || ||||| |||||||||||| |||| || |||
Sbjct 59414 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 59473
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| |||||||||| ||| || |||||| | || ||| |||| | ||||| || ||
Sbjct 59474 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 59533
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| ||||| || || || || || |||| | ||||| | |||||||
Sbjct 59534 ATCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGGCA 59582
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||||||||| || || | ||||| || || ||||| ||||| ||
Sbjct 73853 ATGCAAATTTTTGTGAAGACTCTTACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 73912
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | ||| | | |||||| || || ||||| ||||| |||| |||||
Sbjct 73913 GACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 73972
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||| | |||| ||| |||||||| | |||||| || || | || |||||||||
Sbjct 73973 CAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAAT 74032
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| ||||| || || || ||| | || ||||| |||||
Sbjct 74033 ATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCGTGGTGG 74079
>seq8609
Length=114046
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || || ||||| || |||||||| || |||||||| | ||| ||| |
Sbjct 21161 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTTTAGAAGTGGAGAGCTCG 21220
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| || ||| ||||||||||| |||| |||||
Sbjct 21221 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 21280
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||| | |||| ||| || ||||| |||||||| | ||| |||| ||||| |||
Sbjct 21281 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAAT 21340
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || || || || || | || | ||||| || |||||
Sbjct 21341 ATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCTTCGTGGTGG 21387
>seq2343
Length=47720
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || || ||||| || |||||||| || || ||||| | ||| ||| |
Sbjct 23584 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 23643
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| || ||| ||||||||||| |||| |||||
Sbjct 23644 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 23703
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||| | |||| ||| || |||||| ||||||| | ||| |||| ||||| |||
Sbjct 23704 CAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAAT 23763
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || || || || || | || | ||||| || |||||
Sbjct 23764 ATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCTTCGTGGTGG 23810
>seq15394
Length=389208
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGA--AACGGAACCC 111156
||||||||||||||| || || ||||| || || |||||||| |||| | || |
Sbjct 121930 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTC 121989
Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216
| ||| | ||| | | || || ||||||| ||||| || || | ||| ||
Sbjct 121990 A--GATACCATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATCCCCCCAGAC 122047
Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276
||||| ||||| |||| ||| || || ||| |||| ||| || |||| || |||
Sbjct 122048 CAACAGAGGCTGATTTTTGCTGGTAAGCAACTGGAGGATGGCTGTACCCTGGCTGACTAT 122107
Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || || || || || || || || ||| | ||||| || |||||
Sbjct 122108 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTTCGTGGTGG 122157
>seq481
Length=542854
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || ||||| |||||| | || || |||||||| || | || |||
Sbjct 258162 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 258221
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || || || ||| ||||| || ||| | || || ||
Sbjct 258222 GATACAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 258281
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||| | |||| ||| || |||||| | |||||| | ||| | || || |||||
Sbjct 258282 CAGAGGTTAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAAC 258341
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| |||||||| || ||||| ||||||||||| || |||||
Sbjct 258342 ATTCAAAAGGAATCTACCCTCCATTTGGTGTTGCGTCTTCGTGGTGG 258388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421658255345176
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