Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq49 109 1e-18 seq6 107 4e-18 seq1487 104 5e-17 seq69 104 5e-17 seq68 104 5e-17 seq37 104 5e-17 seq19 104 5e-17 seq18 104 5e-17 seq14 104 5e-17 seq13 104 5e-17 seq11 104 5e-17 seq10 104 5e-17 seq8 104 5e-17 seq1094 98.7 2e-15 seq25 98.7 2e-15 seq16 95.1 3e-14 seq5 95.1 3e-14 seq228 87.8 4e-12 >seq49 Length=1433348 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 1395072 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1395013 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 1395012 AGCCCCACGGTGGGC 1394998 >seq6 Length=79162310 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 62079960 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 62080019 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 62080020 GCCCCACGGTGGGC 62080033 >seq1487 Length=32925 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 316 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 375 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 376 CCCACGGTGGGC 387 >seq69 Length=1085994 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 329048 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 329107 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 329108 CCCACGGTGGGC 329119 >seq68 Length=1133209 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 558563 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 558504 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 558503 CCCACGGTGGGC 558492 >seq37 Length=1802133 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 154619 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 154560 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 154559 CCCACGGTGGGC 154548 >seq19 Length=70911690 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 26660235 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26660294 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26660295 CCCACGGTGGGC 26660306 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 58458075 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 58458134 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 58458135 CCCACGGTGGGC 58458146 >seq18 Length=57801308 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 490257 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 490198 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 490197 CCCACGGTGGGC 490186 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 497395 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 497336 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 497335 CCCACGGTGGGC 497324 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10443677 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10443618 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10443617 CCCACGGTGGGC 10443606 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 25863657 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25863598 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25863597 CCCACGGTGGGC 25863586 >seq14 Length=44799946 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 8097298 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8097357 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8097358 CCCACGGTGGGC 8097369 >seq13 Length=56485995 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 55208509 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 55208450 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 55208449 CCCACGGTGGGC 55208438 >seq11 Length=95484752 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 65042079 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65042138 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 65042139 CCCACGGTGGGC 65042150 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 65042231 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65042290 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 65042291 CCCACGGTGGGC 65042302 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||| |||||||||||||||| || || || | || ||||||||||||||| Sbjct 65042376 CTGGCCCGTCTAGTTCAGTCGGTAGAGCGCAAGGCTCTTTACCTTGTGGTCGTGGGTTCG 65042435 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 65042436 AGCCCCACGGTGGGC 65042450 >seq10 Length=91128445 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 727633 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTCGTGGTCGTGGGTTCGAGC 727574 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 727573 CCCACGGTGGGC 727562 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 43298378 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43298437 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43298438 CCCACGGTGGGC 43298449 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 45673315 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 45673374 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 45673375 CCCACGGTGGGC 45673386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||| || || || |||| || | |||||| ||||||||| Sbjct 38406011 GCCCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGAGGTCGTCGGTTCGAGC 38406070 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 38406071 CCCACGGTGGGC 38406082 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||| ||||||| |||| Sbjct 79864088 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTTGAGC 79864147 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 79864148 CCCACGGTGGGC 79864159 >seq8 Length=100353538 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 42437240 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42437181 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42437180 CCCACGGTGGGC 42437169 >seq1094 Length=54050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| || |||||||||||||||||| Sbjct 3688 GCCCGTCTAGCTCAGTCGGTAGAGCGCAACGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3747 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3748 CCCACGGTGGGC 3759 >seq25 Length=50193149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 44260822 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGATC 44260763 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44260762 CCCACGGTGGGC 44260751 >seq16 Length=102030775 Score = 95.1 bits (104), Expect = 3e-14 Identities = 328/500 (66%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 230127 TAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGTTTGCCGAGCGTCT 230186 ||| || || |||||||| ||||||| | || || || | || ||||| || | Sbjct 57862169 TAAAAAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACTTTCGCCGAACGGTT 57862228 Query 230187 CGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTG 230246 |||| | | || || || || || | || ||||| |||||||| ||||| ||||| Sbjct 57862229 AATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTG 57862288 Query 230247 GCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGA 230306 | | || | || | ||||| || | | | || |||||||| ||| || || Sbjct 57862289 GTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGA 57862348 Query 230307 CGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTAC 230365 || |||||||| | |||| | |||| |||| || |||| | ||||| Sbjct 57862349 TGAAGGTCTCCACTGTGATTTCG-CTTGCTTGCTGTACTCTCTCCTCCGGTCAAAGCTG- 57862406 Query 230366 CATTCGAGA-CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCAT 230423 | | ||| || || | | || | | || || || || | || | ||||||| | Sbjct 57862407 -AGTGAAGAACGCGTGAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT 57862465 Query 230424 TTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACA 230482 || || ||| | || || ||| || |||| ||||||| || | ||| | ||||||| Sbjct 57862466 ATGCGATGCTCTGCCCTG-CGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACA 57862524 Query 230483 TCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG-TGTACAACTCT 230541 |||| |||||||| || | | || | || | || |||| ||||| |||||||| Sbjct 57862525 TCGAGTTCGTAGCGGATAGGTTGTTGGGAGCGTTAGGGTACG-GAAAGATGTACAACGTG 57862583 Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601 ||||| |||| | ||||| || || ||| | |||||||| ||||| |||||||| Sbjct 57862584 GTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAG 57862643 Query 230602 AAGCGTGTCAGTGACTATCA 230621 || | || | || ||||| Sbjct 57862644 AAAAGAGTTGGAGAGTATCA 57862663 >seq5 Length=56898656 Score = 95.1 bits (104), Expect = 3e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||| ||||||||| Sbjct 52302061 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGT-GGTTCGAGC 52302003 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52302002 CCCACGGTGGGC 52301991 >seq228 Length=356584 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| || | || ||||| ||||||||||| || | || Sbjct 283623 TCTGCATGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAGCCGAAGCCT 283564 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGTGAGAAA 229869 |||| ||||| | ||||||||| ||| | | || | || | |||||| | || Sbjct 283563 CTTTTTGGACTGCCGAGGAAGTTGATCTCGATTCCGATCTTCCAC-ACTGGC---AAAAT 283508 Query 229870 CTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGAT 229929 || | | ||||||||| || ||||||| || | || | || ||||| | |||||| Sbjct 283507 CTTACCGCCGACGAACGCCACTTCATCAGTCATGTTCTTGCCTTCTTCGCCGCATCCGAT 283448 Query 229930 GGTATTGTGATGGAAAATCT 229949 || || || | |||||||| Sbjct 283447 GGCATCGTCCTCGAAAATCT 283428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057700013771240