Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 seq22 111 2e-19 seq16 104 2e-17 seq228 84.2 2e-11 >seq19 Length=70911690 Score = 134 bits (148), Expect = 1e-26 Identities = 308/456 (68%), Gaps = 7/456 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || || || |||||||| | || || |||| ||| | ||||| || | Sbjct 44463885 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 44463826 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || || ||||| || || || ||||||||||||||||| ||| || | Sbjct 44463825 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGG 44463766 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || ||||| || || ||| | || || |||||||| |||||||| | | || | Sbjct 44463765 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGC 44463706 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| |||| |||||||||| | ||| || |||||| Sbjct 44463705 CGT--CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAG 44463649 Query 17196 TGGCCTTAAATAATTTCTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 | || | || | | |||||| || | || | ||||| || |||| ||| || Sbjct 44463648 TAGCGTGGAAGAGGCGGTTTTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGA 44463590 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGC 17313 || ||||| || ||||| || ||||| ||||| || || ||||| ||||| ||| || || Sbjct 44463589 CTATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGC 44463531 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 ||||| ||||| || || ||| || | || |||||||| |||||||| || Sbjct 44463530 CTCCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATC 44463471 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | |||||||| || || | | ||| | ||||| Sbjct 44463470 GGATGCGGCGAAGAAGGCAAGGACATGACTGATGAA 44463435 >seq22 Length=61129363 Score = 111 bits (122), Expect = 2e-19 Identities = 380/585 (65%), Gaps = 7/585 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | || || |||| ||| | ||||| || | Sbjct 6287571 ACAGCAAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 6287630 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 6287631 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 6287690 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || || || ||| | ||||| |||||||| ||||||||| | || | | Sbjct 6287691 AGAAAAAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 6287750 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 6287751 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 6287807 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | || ||||| | || |||| || || |||| || || Sbjct 6287808 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 6287866 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313 |||||||| |||||||| || || || || || || || || || | ||||||| || || Sbjct 6287867 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 6287925 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || || || || ||| || | || || || || || ||||| || Sbjct 6287926 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 6287985 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC 17433 | ||||||||||| || | | || ||||||| | | || || | || ||| Sbjct 6287986 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGT 6288045 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 ||||| | |||| || | ||| ||||| || | ||||||||| || | Sbjct 6288046 TTCCCAGTGACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTC 6288105 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || || ||||| | ||| | || |||||| || || || Sbjct 6288106 GGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 6288150 >seq16 Length=102030775 Score = 104 bits (114), Expect = 2e-17 Identities = 236/350 (67%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||| || || | || || |||| ||| | ||||| || | Sbjct 57862383 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 57862324 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 57862323 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 57862264 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || ||||| ||| | ||||| |||||||| ||||||||| | || | | Sbjct 57862263 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 57862204 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 57862203 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 57862147 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | || ||||| | || |||| || || |||| || || Sbjct 57862146 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 57862088 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 |||||||| |||||||| || || || || || || || || || ||||| Sbjct 57862087 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 57862038 >seq228 Length=356584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || || |||||||| | || || |||| ||| | ||||| || || || || Sbjct 282330 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 282389 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || || || |||||||||||||||||| ||| || || || ||| Sbjct 282390 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAAT 282449 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA--CGTCGCGTCTTTGTTAC 17141 || || || ||| | || || |||||||| |||||||| | | ||||| | | | Sbjct 282450 ATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGGCCGT----C 282505 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTT 17171 | |||||||| |||| |||||||||| Sbjct 282506 G-ATCCATTTGAAAGCCCAATCGGCTTTTT 282534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517486418660640