Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 1e-13 seq222 86.0 5e-12 seq52 86.0 5e-12 >seq35 Length=1921379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | ||||| ||| ||||||||||||||||| || || Sbjct 438922 ACATGAGCAATCATGCATGTCAGAAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 438863 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 438862 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 438828 >seq222 Length=367058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 24788 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 24847 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 24848 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 24882 >seq52 Length=1384192 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 309796 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 309737 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 309736 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 309702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361210923652148