Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq18 100 2e-16 seq27 87.8 2e-12 seq23 86.0 5e-12 seq17 84.2 2e-11 seq4 84.2 2e-11 >seq11 Length=95484752 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 29434889 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 29434948 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || ||||| || ||| || |||||||| | || |||||| Sbjct 29434949 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 29435008 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || || || || |||||| |||||||| | ||| |||| ||||||||| Sbjct 29435009 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 29435068 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| ||||| ||| | || || || Sbjct 29435069 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 29435103 >seq18 Length=57801308 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 49488915 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 49488974 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || ||||| || ||| || |||||||| | || |||||| Sbjct 49488975 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 49489034 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || || || || ||||| |||||||| | ||| |||| ||||||||| Sbjct 49489035 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAAT 49489094 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| ||||| ||| | || || || Sbjct 49489095 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 49489129 >seq27 Length=3408634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||| ||||| | || ||||| || |||||||||||| Sbjct 2140618 GAGAAAGAAGGGATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAACTGGAA 2140677 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || | ||| |||| |||||||||||||| ||||| || ||||||||| Sbjct 2140678 GACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCAC 2140728 >seq23 Length=61753794 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| ||||| ||| ||| ||| || Sbjct 39554667 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 39554608 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || ||||| Sbjct 39554607 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 39554548 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||||||||| || ||| | || | ||||| ||||| Sbjct 39554547 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 39554488 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || |||||| |||| | ||| | || || || Sbjct 39554487 ATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTCGTGGCGG 39554441 >seq17 Length=39386523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| || || ||||| ||||| ||| |||| || | | Sbjct 31748567 ATGCAGATCTTCGTCAAAACTTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTCT 31748626 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || ||||| | || ||| || Sbjct 31748627 GACACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAG 31748686 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || |||||||| || |||||| | || |||||||||| ||| Sbjct 31748687 CAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCCTGGCCGATTATAAT 31748746 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| || || ||| Sbjct 31748747 ATCCAGAAGGAATCCACCCTCCAC 31748770 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| || || ||||| ||||| ||| |||| || | | Sbjct 31748339 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTCC 31748398 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| || || ||||| | || ||| || Sbjct 31748399 GACACCATCGACAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAG 31748458 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || || ||||| || || || | || ||||||||||||| Sbjct 31748459 CAGCGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTACAAC 31748518 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 || ||||||||||| || || ||| | || ||||| | || || ||||| Sbjct 31748519 ATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGG-GGGTA 31748567 >seq4 Length=78750349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| || || ||||| ||||| ||| |||| || | | Sbjct 57540782 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTCC 57540723 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||||| || || ||||| | || ||| || Sbjct 57540722 GACACCATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGACCAG 57540663 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || |||||||| || |||||| | || |||||||||| ||| Sbjct 57540662 CAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTATAAT 57540603 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| || || ||| Sbjct 57540602 ATCCAGAAGGAATCCACCCTCCAC 57540579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428288244283940