Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14 102 7e-17 seq11 100 2e-16 seq18 95.1 1e-14 seq13 93.3 3e-14 seq27 87.8 1e-12 >seq14 Length=44799946 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| |||||||| || ||| || ||| | | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || |||||||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCAC 8847927 >seq11 Length=95484752 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 29434889 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 29434948 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || |||||| Sbjct 29434949 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 29435008 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || || || || ||||||||||||||| | ||| |||| ||||||||| Sbjct 29435009 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 29435068 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| |||||||| ||||| ||| | || || || Sbjct 29435069 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 29435103 >seq18 Length=57801308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 49488915 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 49488974 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || |||||| Sbjct 49488975 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 49489034 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || || || || ||||| ||||||||| | ||| |||| ||||||||| Sbjct 49489035 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAAT 49489094 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| |||||||| ||||| ||| | || || || Sbjct 49489095 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 49489129 >seq13 Length=56485995 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| |||||||| || ||| || ||| | | Sbjct 54271004 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 54271063 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 54271064 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 54271123 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||| || |||| ||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 54271124 CAAATGCTCATCTCTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 54271183 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 54271184 ATTCAGAAAGAGTCTACCCTTCAC 54271207 >seq27 Length=3408634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||| ||||| | || ||||| || |||||| ||||| Sbjct 2140618 GAGAAAGAAGGGATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAACTGGAA 2140677 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 || | ||| |||| |||||||||||||||||||| || ||||||||| Sbjct 2140678 GACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCAC 2140728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410750999751272