Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq22 114 1e-20 seq16 89.7 5e-13 >seq22 Length=61129363 Score = 114 bits (126), Expect = 1e-20 Identities = 379/583 (65%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| || || | ||||| || | |||||||||||||| || || | Sbjct 6287579 CAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 6287638 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCAGAAAAG 16351 || ||||||| || | ||||| | ||||||||| |||| | || || || || Sbjct 6287639 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCGGAGAAA 6287695 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || ||||| || ||||| || | || || || || | ||| | | | Sbjct 6287696 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCTCCGCCG 6287752 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 || |||||||| ||||||| | ||||||| ||||| || |||| || || Sbjct 6287753 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || | | || ||||| | | |||| || ||||| || | || | ||| ||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCGGA 16590 || || || || ||||| || || || || || ||||||| ||||||| | || ||||| Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 6287931 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || || || || |||| | || | ||| || ||||| |||||| || Sbjct 6287932 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 6287991 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAAC 16708 || ||||| || || | ||| |||| || | | || | | ||| ||||| | Sbjct 6287992 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTT--CC 6288049 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| | || |||| || | |||||| || ||| | |||||||| || || | || Sbjct 6288050 CAGTGACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 6288109 Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || || ||||||| ||||| ||| ||| || ||||||| Sbjct 6288110 TTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 6288152 >seq16 Length=102030775 Score = 89.7 bits (98), Expect = 5e-13 Identities = 414/650 (64%), Gaps = 39/650 (6%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || | |||||| || || |||||||| ||||| |||| || || || | Sbjct 57862666 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 57862607 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA-TAGTATTTAT---CGCATCCCAATTCCAA 16059 ||||| ||||||| || || || || | ||| | | || | || || | Sbjct 57862606 TCCATCCAATCAAATGGGTT----GACCACGTTGTACATCTTTCCGTACCCTAACGCTCC 57862551 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| || |||||||| || || || || ||||| ||||||| || | |||||| || | Sbjct 57862550 CAACAACCTATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAAC 57862491 Query 16120 TAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 || ||||| | || || || || | | ||||| | ||||| || | | Sbjct 57862490 CAACGCG-CAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTA 57862432 Query 16179 TTATATCTCTTAC------TACACTA----TTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228 ||| |||| || | |||| || | |||||| || || || Sbjct 57862431 CTATCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAG------AGAGT----AC 57862382 Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288 | | ||||| |||||||| || | ||||| || | |||||||||||||| || Sbjct 57862381 AGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAA 57862322 Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCA 16345 || | || ||||||| || | ||||| | ||||||||| |||| | || || Sbjct 57862321 GTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCG 57862265 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || || || || || || ||||| || | || || || || | ||| | | Sbjct 57862264 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCT 57862208 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || |||||||| ||||||| | ||||||| ||||| || |||| Sbjct 57862207 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 57862148 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || || || | | || ||||| | | |||| || ||||| || | || | | Sbjct 57862147 ATGGCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 57862088 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA 16575 || ||||| || || || ||||| || || || || || ||||||||||| Sbjct 57862087 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 57862038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462459111752800