Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq52 96.9 3e-15 seq35 96.9 3e-15 seq222 87.8 1e-12 >seq52 Length=1384192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 309675 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 309734 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 309735 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 309794 Query 20551 GTT 20553 ||| Sbjct 309795 GTT 309797 >seq35 Length=1921379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 438801 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 438860 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 438861 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 438920 Query 20551 GTT 20553 ||| Sbjct 438921 GTT 438923 >seq222 Length=367058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || || | || || || || ||||||||||| || || ||||||||| Sbjct 24909 CAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 24850 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 24849 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 24790 Query 20551 GTT 20553 ||| Sbjct 24789 GTT 24787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399139494476860