Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq25 98.7 2e-15 seq2 89.7 1e-12 >seq25 Length=50193149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || ||||||| ||||| |||||||| ||||||| || |||||| | ||| || Sbjct 26655538 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 26655597 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||||||||| ||| | || ||||| || ||||| Sbjct 26655598 CAAGGGAAGGTTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAT 26655657 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 26655658 AAGGATGACATTGA 26655671 >seq2 Length=106994729 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| |||||| || |||||| | ||| || Sbjct 29495475 GACTTTGACTATGATTACTTTGGCTTCAAAACCTTGGAGAGGTCTTATCTCTTGAAAGTT 29495534 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||||||||| ||| | || ||||| || ||||| Sbjct 29495535 CAAGGGAAGGTTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAT 29495594 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 29495595 AAGGATGACATTGA 29495608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073640545182464