Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq22 140 3e-28 seq16 129 6e-25 seq19 114 1e-20 seq228 102 8e-17 >seq22 Length=61129363 Score = 140 bits (154), Expect = 3e-28 Identities = 371/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| || || || || ||||||| || | |||||||| || ||| Sbjct 6287576 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 6287635 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 6287636 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 6287695 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || || || |||||| || ||||| ||||| | || | | || | || Sbjct 6287696 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 6287754 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 6287755 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 6287932 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || |||||| || | | || | || ||| ||||| ||||| || Sbjct 6287933 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 6287992 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 6287993 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 6288052 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 6288053 T-GACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 6288111 Query 14740 TTTATACATTACCCATATTTCT 14761 || |||||| |||||| |||| Sbjct 6288112 CTTGTACATTTCCCATACTTCT 6288133 >seq16 Length=102030775 Score = 129 bits (142), Expect = 6e-25 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 57862378 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 57862319 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 57862318 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 57862259 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 57862258 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 57862200 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 57862199 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 57862082 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 || || ||||| || ||||| ||||| || || |||||||||||| Sbjct 57862081 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAA 57862037 >seq19 Length=70911690 Score = 114 bits (126), Expect = 1e-20 Identities = 233/344 (68%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||||||||||||||| ||| ||| ||||| || Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 44463761 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || || || ||| || || ||||| ||||| |||| | | | | || Sbjct 44463760 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG-TC 44463702 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| || | |||||| | | || |||||| |||| Sbjct 44463701 G--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCG 44463644 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 | || | | | || || | | | | ||| || || || | || | |||||| Sbjct 44463643 TGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATAC 44463584 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 || |||||||| || || || || || || || || |||||||| Sbjct 44463583 ATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 44463540 >seq228 Length=356584 Score = 102 bits (112), Expect = 8e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||||||||||||||| || ||| ||||| || Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 282446 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 ||||| || || || ||| || || ||||| ||||| |||| Sbjct 282447 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 282490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482290443780640