Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 3e-15 seq13 91.5 1e-13 seq17 84.2 2e-11 seq6 84.2 2e-11 seq4 84.2 2e-11 seq27 82.4 6e-11 >seq14 Length=44799946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || ||||||||||| || ||| | || || ||| | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | |||||||| ||| ||| | || ||||| | || ||| ||| Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | | Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| | || ||||| Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCA 8847928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 8848359 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 8848303 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || |||||| | || ||| Sbjct 8848302 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGA 8848243 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 8848242 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 8848183 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 8848182 TAATATCCAAAAGGAATCCACCCTTCA 8848156 >seq13 Length=56485995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 54270775 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 54270831 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || ||||| | || ||| Sbjct 54270832 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 54270891 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 54270892 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 54270951 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 54270952 TAATATCCAAAAGGAATCCACCCTTCA 54270978 >seq17 Length=39386523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 31748339 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 31748395 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| |||||| | || |||||| | || ||| Sbjct 31748396 TCCGACACCATCGACAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 31748455 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || || || | || || ||||||| Sbjct 31748456 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTAC 31748515 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||| ||||| || |||| || || | || ||||| | || || ||| Sbjct 31748516 AACATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGGGGGT 31748566 >seq6 Length=79162310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 21701502 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 21701558 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| ||||| | || |||||| | || ||| Sbjct 21701559 TCCGACACCATCGATAATGTGAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGAC 21701618 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || |||||| | || || ||||||| Sbjct 21701619 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTAC 21701678 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 21701679 AACATCCAGAAGGAATCCACCCTCCA 21701704 >seq4 Length=78750349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 57541010 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 57540954 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| ||||| | || |||||| | || ||| Sbjct 57540953 TCCGACACCATCGATAATGTGAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGAC 57540894 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || |||||| | || || ||||||| Sbjct 57540893 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTAC 57540834 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 57540833 AACATCCAGAAGGAATCCACCCTCCA 57540808 >seq27 Length=3408634 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || |||||||| |||||||| || || || |||| ||||| |||| Sbjct 2140069 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACAATCACTCTCGAGGTCGA---GAGC 2140125 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||||||| || || | || |||||| | || ||| Sbjct 2140126 TCCGACACGATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGAC 2140185 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||||||| | || | || || |||||||| ||||| | || || ||| ||| Sbjct 2140186 CAGCAACGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGTACCTTGGCCGACTAC 2140245 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| ||||| ||| | ||||| ||| | || | || ||||| || || Sbjct 2140246 AACATCCAGAAGGAGTCAACGCTCCATCTTGTCCTTCGTTTGCGTGGCGG 2140295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418257362764160