Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq25 95.1 2e-14
seq2 95.1 2e-14
>seq25
Length=50193149
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241
||| ||||| |||| ||||||||| || |||||| | | |||||| | || ||
Sbjct 26656956 TGCAATAGACGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 26656897
Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301
||| |||||||||||||| || ||| |||| | ||||| |||||| |||||||||
Sbjct 26656896 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 26656837
Query 94302 GGTATCCTTAAA 94313
|||||||| |||
Sbjct 26656836 GGTATCCTGAAA 26656825
>seq2
Length=106994729
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241
||| ||||| |||| ||||||||| || |||||| | | |||||| | || ||
Sbjct 29496894 TGCAATAGACGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 29496835
Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301
||| |||||||||||||| || ||| |||| | ||||| |||||| |||||||||
Sbjct 29496834 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 29496775
Query 94302 GGTATCCTTAAA 94313
|||||||| |||
Sbjct 29496774 GGTATCCTGAAA 29496763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989468012096340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |