Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 2e-14 seq2 95.1 2e-14 >seq25 Length=50193149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241 ||| ||||| |||| ||||||||| || |||||| | | |||||| | || || Sbjct 26656956 TGCAATAGACGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 26656897 Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301 ||| |||||||||||||| || ||| |||| | ||||| |||||| ||||||||| Sbjct 26656896 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 26656837 Query 94302 GGTATCCTTAAA 94313 |||||||| ||| Sbjct 26656836 GGTATCCTGAAA 26656825 >seq2 Length=106994729 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241 ||| ||||| |||| ||||||||| || |||||| | | |||||| | || || Sbjct 29496894 TGCAATAGACGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 29496835 Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301 ||| |||||||||||||| || ||| |||| | ||||| |||||| ||||||||| Sbjct 29496834 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 29496775 Query 94302 GGTATCCTTAAA 94313 |||||||| ||| Sbjct 29496774 GGTATCCTGAAA 29496763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989468012096340