Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 82.4 7e-11 >seq4 Length=78750349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 |||| |||||| |||||||||||||| | |||||||||| | | || || || | Sbjct 13235764 TATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATCTGGCTAGTTG 13235705 Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288 ||||||| ||||| ||||||| | ||| |||||||| |||||| || || | | Sbjct 13235704 ATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTAGCTATGTTGT 13235645 Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTG 37318 | | || ||||||| ||||| | || || Sbjct 13235644 CTCTAAGAGCATTCCAGTCCCACAGATTTG 13235615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468471224189120