Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq16 114 1e-20 seq22 113 4e-20 seq19 107 2e-18 seq228 105 6e-18 >seq16 Length=102030775 Score = 114 bits (126), Expect = 1e-20 Identities = 233/344 (68%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 57862378 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 57862319 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || | ||||||||||||||||| ||| || ||||| || Sbjct 57862318 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 57862259 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 57862258 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 57862200 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 57862199 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 57862082 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 || || ||||| || ||||| ||||| || || ||||||||||| Sbjct 57862081 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 57862038 >seq22 Length=61129363 Score = 113 bits (124), Expect = 4e-20 Identities = 365/562 (65%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| || || || || ||||||| || | |||||||| || ||| Sbjct 6287576 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 6287635 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || | ||||||||||||||||| ||| || ||||| || Sbjct 6287636 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 6287695 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || || || |||||| || ||||| ||||| | || | | || | || Sbjct 6287696 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 6287754 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 6287755 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGA 14227 || || ||||| || ||||| ||||| || || ||||||| ||||||| | || || || Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 6287931 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 || || || || | | || | || ||| ||||| ||||| || Sbjct 6287932 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 6287991 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 6287992 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCA 6288051 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | | ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 6288052 GTGACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 6288111 Query 14408 TTTATACATTACCCATATTTCT 14429 || |||||| |||||| |||| Sbjct 6288112 CTTGTACATTTCCCATACTTCT 6288133 >seq19 Length=70911690 Score = 107 bits (118), Expect = 2e-18 Identities = 234/346 (68%), Gaps = 7/346 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAA 13986 ||||| ||||| || || || ||||||||||||||||| | ||| || || ||||| | Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGA 44463763 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 | ||||| || || || ||| || || ||||| ||||| |||| | | | | Sbjct 44463762 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG- 44463704 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 ||| |||||||| |||||| || | |||||| | | || |||||| ||| Sbjct 44463703 TCG--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAG 44463646 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || | | || || | | | | ||| || || || | || | |||| Sbjct 44463645 CGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTAT 44463586 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 |||| |||||||| || || || || || || || || |||||||| Sbjct 44463585 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 44463540 >seq228 Length=356584 Score = 105 bits (116), Expect = 6e-18 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 ||||| ||||| || || || ||||||||||||||||| |||| || || ||||| | Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGA 282444 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 | ||||| || || || ||| || || ||||| ||||| |||| Sbjct 282445 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 282490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479673143103200