Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq22 134 1e-26
seq16 129 6e-25
seq19 102 8e-17
seq228 98.7 1e-15
>seq22
Length=61129363
Score = 134 bits (148), Expect = 1e-26
Identities = 369/562 (66%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || ||||| || || || || ||||||| || | |||||||| || |||
Sbjct 6287576 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 6287635
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| ||
Sbjct 6287636 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 6287695
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || || || || |||||| || |||| ||||| | || | | || ||
Sbjct 6287696 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 6287753
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||||| || | |||||| | | | || || ||||| ||
Sbjct 6287754 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||| | | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
|| || ||||| || ||||| ||||| || || |||||||||||| | || || ||
Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 6287932
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
|| ||||| || | | || | ||| ||| || || ||||| ||
Sbjct 6287933 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 6287992
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
|| ||||| || | | || |||| |||| ||||| || | |||| ||| |||
Sbjct 6287993 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 6288052
Query 14137 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195
| | | || ||| ||| ||||| ||||| || | |||||||| || | |||||
Sbjct 6288053 T-GACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 6288111
Query 14196 TTTATACATTACCCATATTTCT 14217
|| |||||| |||||| ||||
Sbjct 6288112 CTTGTACATTTCCCATACTTCT 6288133
>seq16
Length=102030775
Score = 129 bits (142), Expect = 6e-25
Identities = 236/345 (68%), Gaps = 3/345 (1%)
Strand=Plus/Minus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || |||||||| || || || ||||||| || | |||||||| || |||
Sbjct 57862378 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 57862319
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| ||
Sbjct 57862318 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 57862259
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || ||||| || |||||| || |||| ||||| | || | | || ||
Sbjct 57862258 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 57862201
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||||| || | |||||| | | | || || ||||| ||
Sbjct 57862200 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||| | | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 57862082
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001
|| || ||||| || ||||| ||||| || || ||||||||||||
Sbjct 57862081 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAA 57862037
>seq19
Length=70911690
Score = 102 bits (112), Expect = 8e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || || ||||||||||||||||| ||| ||| ||||| ||
Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 44463761
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||||| || || || ||| || || |||| ||||| ||||
Sbjct 44463760 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 44463717
>seq228
Length=356584
Score = 98.7 bits (108), Expect = 1e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || || ||||||||||||||||| || ||| ||||| ||
Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 282446
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||||| || || || ||| || || |||| ||||| ||||
Sbjct 282447 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 282490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478534073370720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |