Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq168 107 2e-18 seq11 105 7e-18 seq27 104 2e-17 seq18 100 3e-16 seq17 96.9 4e-15 seq1 95.1 1e-14 seq14 91.5 1e-13 seq6 91.5 1e-13 seq4 91.5 1e-13 seq19 89.7 5e-13 seq48 86.0 6e-12 seq13 86.0 6e-12 seq3 84.2 2e-11 seq2 84.2 2e-11 seq23 82.4 8e-11 >seq168 Length=529997 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || || | ||||||||||||||| || Sbjct 131343 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCTTCGAGTTGTTTTCCG 131284 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||||||||| || || || |||||||| ||||| || || ||| Sbjct 131283 GCAAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCTTTA 131224 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||| ||||| ||| Sbjct 131223 ACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCAGTCAAGGTT 131164 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 131163 TTCACGAAGATTTGCAT 131147 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||| | ||||| || ||||| || || || ||||||||| Sbjct 131601 CCACCTCGAAGACGTAGAACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCT 131542 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||| |||||||| || || || |||| ||||||||||| || || || Sbjct 131541 AAAGTCCGCCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 131482 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | || | |||||| | | || || Sbjct 131481 ATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACC 131422 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| ||||| | || || ||||| |||||||| Sbjct 131421 TCGAGAGTGATCGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 131375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||||||| || || | ||||||||| ||||| || Sbjct 131115 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGCTGTTTTCCG 131056 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || ||||| |||||||| || || ||||| || Sbjct 131055 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTC 130996 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| || | | || || || | ||| | |||||||||||| | || Sbjct 130995 ACGTTGTCGATCGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTC 130936 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 130935 TTAACGAAGATCTGCAT 130919 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || || || ||||| || ||||||| | Sbjct 131829 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATTAGCC 131770 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || ||||| |||||| | |||| | ||||||| | || || Sbjct 131769 AAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGACCTGGTGGA 131710 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||| |||| | || ||| Sbjct 131709 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 131650 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 131649 TCTAAAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 131603 >seq11 Length=95484752 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | || || || || || |||||||||||| || |||| ||| Sbjct 29434873 CAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 29434814 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||||| || ||| | || || | |||||| || || || |||||||| ||||| Sbjct 29434813 CTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 29434754 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || ||| || | | || | ||||| | | ||| ||||| | ||| | || Sbjct 29434753 TTGGATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGGT 29434694 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| ||||| ||||| || ||||| Sbjct 29434693 CTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 29434661 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || | ||| | || || || || || |||||||||||| Sbjct 29434660 GCCACCACGTAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 29434601 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||| ||||| || || |||| |||||||| || || || || Sbjct 29434600 CAAGGTCCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 29434541 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| || | | || | |||||| | || || Sbjct 29434540 GATCCCTTCCTTGTCTTGGATTTTCGCCTTAACGTTGTCGATCGTGTCGGAACTCTCGAC 29434481 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||||||||||| || || ||||| || ||||| Sbjct 29434480 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 29434433 >seq27 Length=3408634 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | || | ||| | || || || || || |||||||| ||| | Sbjct 2140295 CCGCCACGCAAACGAAGGACAAGATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGCC 2140236 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| || || |||| ||||||||||| || || || Sbjct 2140235 AAGGTACGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 2140176 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | |||||| | | || || Sbjct 2140175 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTGTCGATCGTGTCGGAGCTCTCGACC 2140116 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||||||||| ||||| ||||| |||||||| Sbjct 2140115 TCGAGAGTGATTGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 2140069 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||| | ||||| || ||||| || || || ||||||||| Sbjct 2140523 CCACCTCGAAGACGTAGAACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCT 2140464 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||| |||||||| || || || |||| ||||||||||| || || || Sbjct 2140463 AAAGTCCGCCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 2140404 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | || | |||||| | | || || Sbjct 2140403 ATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACC 2140344 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || || | || || ||||| |||||||| Sbjct 2140343 TCGAGAGTGATCGTCTTTCCCGTAAGCGTCTTAACGAAGATTTGCAT 2140297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||||||| || || | ||| || || ||||| || Sbjct 2140037 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCAAGCTGTTTTCCG 2139978 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || ||||| |||||||| || || ||||| || Sbjct 2139977 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGTCTTC 2139918 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||||||| | || Sbjct 2139917 ACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTC 2139858 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 2139857 TTGACGAAGATCTGCAT 2139841 >seq18 Length=57801308 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | || || || || || |||||||||||| || |||| ||| Sbjct 49488899 CAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 49488840 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||||| || ||| |||| || | |||||| || || || |||||||| ||||| Sbjct 49488839 CTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 49488780 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | || | ||||| | | ||| ||||| | ||| | || Sbjct 49488779 TTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGGT 49488720 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| || || ||||| || ||||| Sbjct 49488719 CTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 49488687 >seq17 Length=39386523 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | ||| ||||| ||||| || Sbjct 31748535 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCG 31748476 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| || Sbjct 31748475 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTC 31748416 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 31748415 ACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 31748356 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 31748355 TTGACGAAGATCTGCATA 31748338 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || || |||||| || || | |||||||| ||||| || Sbjct 31748763 GTGGATTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCG 31748704 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| ||| Sbjct 31748703 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 31748644 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 31748643 ACATTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAAGTT 31748584 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 31748583 TTGACGAAGATCTGCATA 31748566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | | |||||| | |||| || ||||| || || ||||| ||||| Sbjct 31749022 GCCTCCACGAAGCCTCAAAACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAGC 31748963 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || ||| || || || || || || ||| |||||| |||||| || || || || Sbjct 31748962 CAAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGG 31748903 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || |||| | || | ||||||| || || Sbjct 31748902 GATCCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCCGAACTCTCCAC 31748843 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 31748842 CTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 31748795 >seq1 Length=92291805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | || ||||||||||| | || ||||| ||||| ||||| || || Sbjct 4402273 CCTCCTCGAAGTCGTAAAACTAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCTGCA 4402332 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| ||| || || || || || |||||| | |||| | ||||| || ||||| Sbjct 4402333 AGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 4402392 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||||| | || || Sbjct 4402393 ATCCCCTCCTTGTCCTGAATTTTCGCTTTCACATTGTCAATGGTGTCCGAGCTCTCGACC 4402452 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || |||||||| || || |||||||| ||||| Sbjct 4402453 TCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 4402499 >seq14 Length=44799946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | ||| | ||| | |||| |||||| ||||| || ||||| ||||| Sbjct 8847901 TGGCCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCTTTCTGAATGTTATAATCA 8847960 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || ||| ||||| | |||||| || ||| |||| || | ||||||||| || Sbjct 8847961 GCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAGATGAGCCTTTGCTGATCAGGT 8848020 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| || || ||| ||| || | | || | || || | | ||| Sbjct 8848021 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTATCGGAGCTTTCA 8848080 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | || ||||||||||| || || || || || ||||| Sbjct 8848081 ACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACAAAAATCTGCAT 8848130 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||| | |||| || ||||| ||||| || || ||||| | Sbjct 8848132 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 8848191 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | |||||| ||||| |||||| ||| || || || || || Sbjct 8848192 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 8848251 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| || || | | || | ||||| | || ||| Sbjct 8848252 ATGCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 8848311 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| || ||||| || || |||||||| Sbjct 8848312 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 8848358 >seq6 Length=79162310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | |||||||| ||||| || Sbjct 21701698 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTTCCG 21701639 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| ||||| || Sbjct 21701638 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTC 21701579 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 21701578 ACATTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 21701519 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 21701518 TTGACGAAGATCTGCATA 21701501 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | ||| ||||| ||||| || Sbjct 21701470 GTGGATTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCG 21701411 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| ||| Sbjct 21701410 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 21701351 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || | || | ||||||||||| | ||| Sbjct 21701350 ACATTATCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTT 21701291 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 21701290 TTGACGAAGATCTGCAT 21701274 >seq4 Length=78750349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | |||||||| ||||| || Sbjct 57540814 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTTCCG 57540873 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| ||||| || Sbjct 57540874 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTC 57540933 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 57540934 ACATTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 57540993 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 57540994 TTGACGAAGATCTGCATA 57541011 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||||||| || || | ||| ||||| ||||| || Sbjct 57541042 GTGGATTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCG 57541101 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| |||||| ||| Sbjct 57541102 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 57541161 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || | || | ||||||||||| | ||| Sbjct 57541162 ACATTATCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTT 57541221 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 57541222 TTGACGAAGATCTGCAT 57541238 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || || |||||| || || | |||||||| ||||| || Sbjct 57540586 GTGGATTCCTTCTGGATATTATAATCGGCCAAGGTACGGCCATCTTCGAGCTGTTTGCCG 57540645 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || |||||||| ||||| ||||| || Sbjct 57540646 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTG 57540705 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| || ||| Sbjct 57540706 ACATTGTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTT 57540765 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 57540766 TTGACGAAGATCTGCATA 57540783 >seq19 Length=70911690 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | || ||||| ||||| | || ||||||||||| ||||| || || Sbjct 3137268 CCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCTTTTTGGATGTTATAGTCTGCA 3137327 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| ||| || || || || || || ||| | |||| | ||||| || ||||| Sbjct 3137328 AGTGTCCTCCCCTCCTCAAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGA 3137387 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||||| | || || Sbjct 3137388 ATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCGACC 3137447 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || |||||||| || || |||||||| ||||| Sbjct 3137448 TCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 3137494 >seq48 Length=1435396 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| ||||| || |||||||| || | |||| || || |||||||||||| Sbjct 1250263 GTAGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGTTGTTTACCA 1250204 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | || || || ||||| || ||||||||||| || || || Sbjct 1250203 GCAAAGATAAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTG 1250144 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| ||||||| || | |||||||| || | ||| Sbjct 1250143 ATATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATTGTCTTGCCAGTAAGGGTT 1250084 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||||||||| Sbjct 1250083 TTGACAAATATTTGCAT 1250067 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || ||||| | || || || ||||| ||||||||||| | Sbjct 1229526 CCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCC 1229467 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||||| ||||| ||||| ||| |||| || | ||||| || ||||| Sbjct 1229466 AGGGTATGGCCATCTTCTAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGG 1229407 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||||| | ||| || Sbjct 1229406 ATCCCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTTTCCACC 1229347 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || || || ||||||||| Sbjct 1229346 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCATA 1229299 >seq13 Length=56485995 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||| | |||| || ||||| ||||| || || ||||| | Sbjct 54271002 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 54270943 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | |||||| ||||| |||||| ||| || || || || || Sbjct 54270942 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 54270883 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || ||| Sbjct 54270882 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 54270823 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| || ||||| || || |||||||| Sbjct 54270822 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 54270776 >seq3 Length=37363027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 || ||||| ||||| |||||||| || ||| | |||| |||||||||||| ||||| Sbjct 31841548 GTGGATTCCTTTTGGATGTTGTAGTCAGCTAAG-GTGCGGCCGTCTTCGAGTTGCTTACC 31841490 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||| || ||||| || || || ||||||||||||||||| || || ||| Sbjct 31841489 GGCGAAGATGAGGCGTTGTTGGTCCGGGGGTATGCCTTCTTTGTCTTGGATCTTGGCTTT 31841430 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| | | || || || | || | ||||| || || | || Sbjct 31841429 GACATTATCGATTGTGTCGGAAGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 31841370 Query 143167 TTTTACGAATATTTGCAT 143184 ||| ||||| || ||||| Sbjct 31841369 TTTCACGAAGATCTGCAT 31841352 >seq2 Length=106994729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| || || | ||| |||| ||||| || ||||| | ||| |||| ||| ||| || Sbjct 29497382 AATGTGTCTGCAAGACCCTGAACTCCAATACCAATGGGCCTATGACGCAAATTTGATCTT 29497323 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 156975 || |||||||||| ||||||| |||| |||||||||||| || Sbjct 29497322 TTGGCAGTTTCAACAGGGTAGTAATTAACATCAATAATTTTGTT 29497279 >seq23 Length=61753794 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || ||||| | || || || ||||| ||||||||||| | Sbjct 10996620 CCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGAATCCTTTTGGATGTTGTAATCAGCC 10996561 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| ||||| ||| |||| || | ||||| || ||||| Sbjct 10996560 AGGGTACGACCATCTTCTAGTTGCTTACCGGCAAAGATAAGCCCCTGCTGGTCTGGAGGG 10996501 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||| |||||| || || || | | || | ||||||| | ||| || Sbjct 10996500 ATCCCTTATTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTTTCCACC 10996441 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || || || ||||||||| Sbjct 10996440 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCATA 10996393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506956422903360