Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_004167.1 Length=39325 Score E Sequences producing significant alignments: (Bits) Value seq1219 127 5e-25 >seq1219 Length=45996 Score = 127 bits (140), Expect = 5e-25 Identities = 195/272 (72%), Gaps = 11/272 (4%) Strand=Plus/Minus Query 20511 ACACAATGGACCCGGCATACATCACCGTTCACAACACGGCGAACACGGCG-AGAGGGGCA 20569 |||| |||| || ||||||||| | ||| | || || || || | ||||| ||| Sbjct 9275 ACACTATGGTGCCTCAATACATCACGATCCACGAGACAGCTAAT-CGTAGTAGAGGAGCA 9217 Query 20570 AGCGCAGCCATGCACGCCCGTTATGAGAAAAATCCGGAAACACCCACCAGCTGGCACTTT 20629 | ||||| ||||| || || |||| |||||| || ||| | | || ||||||||| Sbjct 9216 AATGCAGCTATGCATGCTCGATATGTGAAAAACCCAACAACCGCTGCGAGTTGGCACTTT 9157 Query 20630 ACAGTAGACGA--CAAAGA-GATTTATCAGCATCTGCCATTAAATGAGAACGGCTGGCAC 20686 || |||||||| ||| | | | ||||| ||| |||| |||| ||| || || |||||| Sbjct 9156 ACTGTAGACGATGGAAATACGGTATATCAACATTTGCCTTTAACTGAAAATGGTTGGCAC 9097 Query 20687 GCGGGAGA---CGGAAACCGCGGAACCGGGAACCGGAAATCTATCGGCATTGAAATCTGT 20743 || || || |||||| ||||| |||||||| |||| ||||| ||||| || || Sbjct 9096 GCTGGCGATGGCGGAAA---TGGAACGGGGAACCGACAATCAATCGGTATTGAGATTTGC 9040 Query 20744 GAGAATAGCGATGGAGATTTTGAGAAAGCCGT 20775 | || ||||| |||||||| ||||| || Sbjct 9039 GTAAACGAAGATGGTGATTTTGATAAAGCAGT 9008 Score = 105 bits (116), Expect = 2e-18 Identities = 261/394 (66%), Gaps = 4/394 (1%) Strand=Plus/Minus Query 26504 CCCATTTTAACCCGCTCCCCTAAGTTCTCTCGCTCCCATTGCGCCATGGCGGCCACTAAT 26563 ||||| |||| || || |||| || |||| |||||||| |||| |||||| || | Sbjct 45666 CCCATAGTAACACGTTCGCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCAGA 45607 Query 26564 GTAATAAATAGCCGGCCTGTTGCTGATCCTGTGTCATAAACTTCCGTAGCAGAACGAAAG 26623 |||||||| ||||| || | |||| ||||||||||||||| |||||| ||| Sbjct 45606 GTAATAAAAAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCACTCTTAAAT 45547 Query 26624 ACTGCCTGATATTTATCAAAGTAATCTAAAAGGGAATAGAGGTCACGAACAGAGCGGGTC 26683 | || || ||||| || || || || || || |||||| ||||| Sbjct 45546 TTACAATTATTTTGCTCAAATATGTCCAATAGCTTGTACAGATCTAAAACAGACCGGGTA 45487 Query 26684 AGACGGTCGAGCCTGTAGACTAAAACTGTGTCAATAATGCCCTGTTCTATGTGCCTAAGC 26743 || || || ||||| || || | || || |||| || | || || || || | | Sbjct 45486 AGGCGATCCAGCCTATAAACCAGCACAACATCGATAAACCCTTCCTCAATATGACTGATC 45427 Query 26744 ATCAGCTCCAACGACGGCCTATGTATGTCTTTTGCGGACTTGCCTTCATCAATATAAAAT 26803 || | | |||| || | | | | | ||| ||||| ||||||| || | ||| || Sbjct 45426 ATACGTTGCAACTGAGGTCGTTCTGTATTTTTAGCGGATATGCCTTCGTCTACATAGAA- 45368 Query 26804 TTGTAACT--ATCCCATCCTTGAGAAATGCAATACGCTTTTAGCTTTTCCTTTTGGGCAG 26861 | |||| |||||| |||||||| ||| |||| || ||| || |||| Sbjct 45367 -TCCAACTACATCCCAATTTTGAGAAACAGTATATGCTTGTAATCGTTCTCGCTGTGCAG 45309 Query 26862 ATATTGAGTACCCTTCTTTTGCTTGTTCTTCTGT 26895 ||||||| || ||||| || |||||||||| || Sbjct 45308 ATATTGAATAACCTTCGTTAACTTGTTCTTCCGT 45275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125704742895912