Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq27 86.0 4e-12 seq168 82.4 5e-11 >seq27 Length=3408634 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||||| || || || ||||||||||| | ||| | | ||| || Sbjct 2140505 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 2140446 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||||||||| || || | |||||||||||| | || |||||||| || || | Sbjct 2140445 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 2140386 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || | | |||||||| | | || || ||||| ||||| Sbjct 2140385 ATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGATCGTC 2140329 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || || ||||| |||||||| Sbjct 2140328 TTTCCCGTAAGCGTCTTAACGAAGATTTGCAT 2140297 >seq168 Length=529997 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||||| || || || ||||||||||| | ||| | | ||| || Sbjct 131583 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 131524 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||||||||| || || | |||||||||||| | || |||||||| || || | Sbjct 131523 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 131464 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || | | |||||||| | | || || ||||| ||||| Sbjct 131463 ATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGATCGTC 131407 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || || ||||| |||||||| Sbjct 131406 TTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 131375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318742059086904