Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq13 96.9 3e-15 seq25 89.7 4e-13 seq11 87.8 2e-12 seq1 87.8 2e-12 seq23 84.2 2e-11 seq18 82.4 6e-11 >seq14 Length=44799946 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || |||||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 8847928 TGAAGTGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 8847987 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||| || ||||| || | ||||| || || ||| ||| Sbjct 8847988 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 8848047 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||||||| Sbjct 8848048 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 8848107 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 8848108 AAAGTCTTGACAAAAATCTGCAT 8848130 >seq13 Length=56485995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 54271206 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 54271147 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||| | || ||||| || | ||||| || || ||| ||| Sbjct 54271146 TTGCCGGCAGAGATGAGCATTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 54271087 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||| ||| Sbjct 54271086 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCTGTC 54271027 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 54271026 AAAGTCTTGACAAAAATCTGCAT 54271004 >seq25 Length=50193149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || || || || || |||||| | | |||| | |||||| Sbjct 28160471 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 28160412 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 28160411 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 28160352 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | | ||| | ||| | || |||| |||||| || || Sbjct 28160351 ATCTTGGCTTTCACATTGTCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTTT 28160292 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 28160291 CCAGTGAGAGTTTTGACAAAGATTTGCAT 28160263 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || |||||||||||| || ||||| || ||||| || ||||| ||| || Sbjct 28160717 CCACCACGCAGCCGCAACACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCC 28160658 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || || |||||| | || ||||| ||| | || ||||| || || || ||| Sbjct 28160657 AATGTCCTACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 28160598 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| || ||| ||||| | | ||| | |||| | ||| Sbjct 28160597 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCGGAACTTTCAACC 28160538 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 28160537 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTTACAAAGATCTGCAT 28160491 >seq11 Length=95484752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||||||| Sbjct 29435091 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 29435032 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 29435031 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 29434972 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 29434971 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 29434912 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 29434911 AACGTCTTGACGAAAATCTGCAT 29434889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || || || || || |||||||||||| || Sbjct 29434887 CCACCACGAAGCCTCAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 29434828 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | || || | |||||| || ||| | || ||||| || || || || Sbjct 29434827 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 29434768 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-T 20160 | |||||| ||||| || ||| || || | | ||| | || || || || Sbjct 29434767 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCGAC 29434709 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| |||||||||| |||||||| || || ||||| Sbjct 29434708 TTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 29434661 >seq1 Length=92291805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| |||||||| ||| | | |||| ||| || | |||| Sbjct 4409825 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGT 4409884 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||||||||||||||| || || | |||||||||||| ||||| Sbjct 4409885 TTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 4409944 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | ||| || |||| |||| || | ||| |||||||| || || Sbjct 4409945 GCCTTGACATTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTA 4410004 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| || ||||| Sbjct 4410005 AGGGTTTTCACAAAGATCTGCAT 4410027 >seq23 Length=61753794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || || || || || |||||| | | ||| | |||||| Sbjct 39554003 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 39554062 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 39554063 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 39554122 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | ||| | ||| | ||| |||| |||||| || || Sbjct 39554123 ATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCCACCTCCAAGGTAATTGTCTTT 39554182 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 39554183 CCAGTGAGAGTTTTGACAAAGATTTGCAT 39554211 >seq18 Length=57801308 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||| ||| Sbjct 49489117 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAACTGT 49489058 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 49489057 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTC 49488998 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 49488997 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 49488938 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 49488937 AACGTCTTGACGAAAATCTGCAT 49488915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419540419698588