Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_005833.1 Length=48836 Score E Sequences producing significant alignments: (Bits) Value seq5259 102 3e-17 >seq5259 Length=4105 Score = 102 bits (112), Expect = 3e-17 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 35127 CGATCACCTTTATACCTGTATGCAACCATTTCGAGGTTTTCAGGGGTGAAGCAGGCCCAT 35186 ||||| ||||| || ||||||| ||| ||||| || ||| ||| | ||| || |||||| Sbjct 953 CGATCTCCTTTGTATCTGTATGAAACAATTTCAAGATTTGAAGGTGAGAAACACGCCCAT 894 Query 35187 ACCTCTTGCTTTGT-GTGAAATGCAATATGCTGAGCATCAATCCAGTTAAGGCATAAGTA 35245 || ||||| || | | || | |||| || ||||||||||| | || ||| | ||| Sbjct 893 ACTTCTTGACCCGTCGCCAGGTGTA-TATGTTGCGCATCAATCCAATCAACGCAAAGGTA 835 Query 35246 GATCGCCTTTTCAGTTTTACCAGTCACGGCAACCGAGCAACTCGTGTATTTCTTCGCATA 35305 || | || ||||| || ||||| || ||||| | | |||||| | ||||| || Sbjct 834 AATTGTTTTGTCAGTCTTGCCAGTTACCGCAACGCTTCCGCGCGTGTAATCTTTCGCGTA 775 Query 35306 AAATGACT-CTCTT-CCTTCTTCATCAATAATCAAAATATTGCAAAACTCATCATC 35359 ||| ||| || || ||||| |||| | | | ||||||||| | |||||||| Sbjct 774 AAA--ACTGCTTTTACCTTCCTCATTGACGAAAAGAATATTGCACATATCATCATC 721 Score = 96.9 bits (106), Expect = 1e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 34580 TCTTTGCTCTGGTAGTACCGAAGCGTCTCAGCGACGTTTTGCGCAAGACCGTTAACGGTC 34639 |||||||| |||||||| || || || || || || | |||||| | || | || || Sbjct 1648 TCTTTGCTTTGGTAGTAACGCAGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTT 1589 Query 34640 AATGAATCGTTAAGCAAGATCACATACTTACCGTCAGCGGCAGTCTGACCATCCGTAGAG 34699 | || || || | || ||||||||| || ||| | | | || || || || | Sbjct 1588 AGCGAGTCATTCAACAGGATCACATAATTTACGTTTTCTACTGGCTCGCCGTCAGTCTGG 1529 Query 34700 ATAGCCTTTAGCTCTGTGTCGCTCACAATGTCGCTGATTACCGCCAG-TTTAATTGGTTG 34758 || || || | ||||| ||||| ||||| |||||||| |||||||| ||||| | || Sbjct 1528 ATCGCTTTCATTTCTGTATCGCTTACAATATCGCTGATAACCGCCAGTTTTAAAGGAGTG 1469 Query 34759 CTCCAGGAATACGATAGTTGCACCGACTCGAATCAGAGCAAGCTGATCTTTCCATTTTGT 34818 | | |||||||| ||||| || ||||| |||| |||| | || ||||||||| Sbjct 1468 GT-TAAAAATACGATTGTTGCGCCAGTGCGAATAAGAGAAAGCGGCTCACGCCATTTTGT 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156136636644048