Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq9 1211 0.0 seq12 217 9e-52 seq15 176 3e-39 >seq9 Length=117247901 Score = 1211 bits (1342), Expect = 0.0 Identities = 683/691 (99%), Gaps = 0/691 (0%) Strand=Plus/Plus Query 22703 TTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT 22762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968702 TTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT 76968761 Query 22763 GCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGG 22822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968762 GCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGG 76968821 Query 22823 ATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGC 22882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968822 ATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGC 76968881 Query 22883 TCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATACGTGCGCAACAACCGTCT 22942 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 76968882 TCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCT 76968941 Query 22943 TCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATC 23002 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 76968942 TCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC 76969001 Query 23003 CCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGG 23062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969002 CCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGG 76969061 Query 23063 TTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCAT 23122 ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 76969062 TTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACGCCCAT 76969121 Query 23123 AATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTG 23182 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969122 AATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTG 76969181 Query 23183 CGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGA 23242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969182 CGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGA 76969241 Query 23243 GCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGC 23302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969242 GCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGC 76969301 Query 23303 TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCA 23362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969302 TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCA 76969361 Query 23363 TACACTAAATCAGTAAGTTGGCAGCATCACC 23393 ||||||||||||||||||||||||||||||| Sbjct 76969362 TACACTAAATCAGTAAGTTGGCAGCATCACC 76969392 Score = 419 bits (464), Expect = 1e-112 Identities = 244/252 (97%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 22921 AATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGG 22980 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 101240584 AATTCGTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGG 101240525 Query 22981 CGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA 23040 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 101240524 CGCGATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA 101240465 Query 23041 CTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAA 23100 ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 101240464 CTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAA 101240405 Query 23101 TCGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGG 23160 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 101240404 TCGTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGG 101240345 Query 23161 CCATATCAATGA 23172 |||||||||||| Sbjct 101240344 CCATATCAATGA 101240333 Score = 228 bits (252), Expect = 5e-55 Identities = 128/129 (99%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 22794 GATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCA 22853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48695793 GATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCA 48695852 Query 22854 TATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCG 22913 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 48695853 TATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCG 48695912 Query 22914 TTCACCGAA 22922 ||||||||| Sbjct 48695913 TTCACCGAA 48695921 >seq12 Length=102570143 Score = 217 bits (240), Expect = 9e-52 Identities = 126/130 (97%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22884 CATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATACGTGCGCAACAACCGTCTT 22943 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 92580261 CATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTT 92580320 Query 22944 CCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCC 23003 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 92580321 CCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC 92580380 Query 23004 CCACTGTTCG 23013 |||||||||| Sbjct 92580381 CCACTGTTCG 92580390 >seq15 Length=91555666 Score = 176 bits (194), Expect = 3e-39 Identities = 103/107 (96%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23082 TTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGG 23141 |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 53552145 TTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGG 53552204 Query 23142 CATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACC 23188 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53552205 CATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACC 53552251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303201391928508