Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq22 118 6e-22 seq16 113 2e-20 seq19 111 8e-20 seq10 111 8e-20 seq267 105 3e-18 seq197 105 3e-18 seq3 105 3e-18 seq254 104 1e-17 seq4 104 1e-17 seq1 100 1e-16 seq12 98.7 5e-16 seq1023 96.9 2e-15 seq536 96.9 2e-15 seq2 96.9 2e-15 seq21 91.5 8e-14 >seq22 Length=61129363 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || |||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct 49168704 AAACAAAGTGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 49168645 Query 11508 TRACCAACTGAGCTAATGGGCCGT 11531 | ||||||||||||||| |||||| Sbjct 49168644 TAACCAACTGAGCTAATAGGCCGT 49168621 Score = 116 bits (128), Expect = 2e-21 Identities = 79/89 (89%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| |||| |||||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 17073984 AAAAAACAAAATTGTTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCAC 17073925 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 17073924 GACGCTCTAACCAACTGAGCTAATAGGCC 17073896 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 49142274 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTATC 49142215 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 49142214 CAACTGAGCTAATAGGCC 49142197 Score = 95.1 bits (104), Expect = 6e-15 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11459 CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 |||||| ||| |||||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 2120013 CCCATGCAAGTTTCGAACCTGCGACCTTCAAGTTATTAGCACGACGCTCTAACCAACTGA 2120072 Query 11519 GCTAATGGGCC 11529 |||||| |||| Sbjct 2120073 GCTAATAGGCC 2120083 >seq16 Length=102030775 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | ||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 25047071 ATTGGCCCATGCAGGAATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 25047130 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 25047131 ACTGAGCTAATAGGCC 25047146 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 61212394 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTATCC 61212453 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 61212454 AACTGAGCTAATAGGCC 61212470 Score = 86.0 bits (94), Expect = 3e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 11476 CCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 61215697 CCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 61215644 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| |||||||||| ||||||||| |||||| Sbjct 61215763 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCTCGTTATTAGCCCGACGCTCTAACCAAC 61215704 Query 11516 TGAGCT 11521 |||||| Sbjct 61215703 TGAGCT 61215698 >seq19 Length=70911690 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| ||| || ||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct 38528095 AAAATATCTTAAGTGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 38528154 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 38528155 CGCTCTAACCAACTGAGCTAATAGGCC 38528181 Score = 104 bits (114), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11447 AAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| ||| ||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 34427895 AAAACAAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 34427954 Query 11506 TCTRACCAACTGAGCTAATGGGC 11528 ||| |||| |||||||||| ||| Sbjct 34427955 TCTAACCAGCTGAGCTAATAGGC 34427977 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 38419787 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 38419728 Query 11516 TGAGCTAATGGGCCGT 11531 | ||||||| |||||| Sbjct 38419727 TCAGCTAATAGGCCGT 38419712 Score = 91.5 bits (100), Expect = 8e-14 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAAT--CAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| || ||||||| || ||||||||||| | | ||||||| | |||||| ||||| Sbjct 35219189 AATAAAGAAAAAATACCATTATTGGCCCATGCAGGTTTCGAACCCGCTACCTTCTCGTTA 35219248 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||| |||| |||| |||||||||| |||||| Sbjct 35219249 TTAGCACGACTCTCTAACCAGCTGAGCTAATAGGCCGT 35219286 >seq10 Length=91128445 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||||| ||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 31584644 AACAAATCAGGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 31584703 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 31584704 CGCTCTAACCAACTGAGCTAATAGGCC 31584730 >seq267 Length=583019 Score = 105 bits (116), Expect = 3e-18 Identities = 79/93 (85%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||| | ||| | |||||||| | | |||||||| ||||||||||||||||| Sbjct 296678 AATAAAAATTTAAAATAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 296619 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 296618 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 296586 >seq197 Length=418699 Score = 105 bits (116), Expect = 3e-18 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| ||| | || ||||| | |||||||| | | |||||||| |||||||||||||||| Sbjct 250175 GAAATAAAATAAGATCAAGT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATT 250233 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||| |||||||| |||| Sbjct 250234 AGCACGACGCTCTAACCAACCGAGCTAATAGGCC 250267 >seq3 Length=37363027 Score = 105 bits (116), Expect = 3e-18 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||| || ||| | ||||||| | | |||||||| |||||||||||||||||||| Sbjct 17565172 TAAAAAAATATTAAAATAGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 17565231 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| |||| Sbjct 17565232 CGACACTCTAACCAACTGAGCTAATAGGCC 17565261 >seq254 Length=333510 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 321130 AAAAACAAATAAAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAT 321189 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||| |||||||| |||| Sbjct 321190 GACGCTCTAACCAACCGAGCTAATAGGCC 321218 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| ||| Sbjct 268568 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACC 268627 Query 11513 AACTGAGCTAATGGGCCGT 11531 |||| ||||||| |||||| Sbjct 268628 AACTCAGCTAATAGGCCGT 268646 >seq4 Length=78750349 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||| |||||||| | | |||||||| ||||||| ||||||||||||| || Sbjct 42498198 AAATAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 42498256 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 42498257 GCTCTAACCAACTGAGCTAATGGGCC 42498282 >seq1 Length=92291805 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||| |||| ||| ||||||||| | | |||||||| ||||||| ||||||||| Sbjct 39003070 AAATAATACAAAAACAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTTGCGTTATTA 39003013 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||| |||||||||||||| |||| Sbjct 39003012 GCATGACGCTCTATCCAACTGAGCTAATAGGCC 39002980 >seq12 Length=102570143 Score = 98.7 bits (108), Expect = 5e-16 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||||||| | |||||| ||| |||||||| |||||||| ||||||||||| ||| Sbjct 43571202 AAAATCAAATGGCCCCATGCAAGTTTCGAACCTGCGACCTTCAAGTTATTAGCACACCGC 43571261 Query 11506 TCTRACCAACTGAGCTAATGGGC 11528 ||| ||||||||||||||| ||| Sbjct 43571262 TCTAACCAACTGAGCTAATAGGC 43571284 >seq1023 Length=59493 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| | Sbjct 26556 AAATATGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACAACGCTCTAA 26615 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 26616 CCAGCTGAGCTAATAGGCC 26634 >seq536 Length=146432 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || ||||| |||||||| | | |||||||| ||||||| ||||||||||||| |||| | Sbjct 74437 AAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCGC 74379 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||||||||| Sbjct 74378 TAACCAACTGAGCTAATGGGCC 74357 >seq2 Length=106994729 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||||||||||| ||||||||| ||||| Sbjct 55061617 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGTTCGACGCTCTAACCAA 55061676 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 55061677 CTGAGCTAATAGGCC 55061691 Score = 91.5 bits (100), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11442 ATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| ||| | ||||||||| | | |||||||| ||||| |||||| |||||||| Sbjct 57673543 ATAAAATAATGATGATGGCCCATGCAGGTCTCGAACCTGCGACCGTCGCGTGATTAGCAC 57673602 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 57673603 GACGCTCTAACCAGCTGAGCTAATAGGCC 57673631 >seq21 Length=47987235 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||| |||||||| |||||| |||||||| |||||| Sbjct 18157850 TGGCCCATGCAGGTCTCGAACCTGCGACGTTCGCGTTTTTAGCAGGACGCTCTAACCAAC 18157909 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18157910 TGAGCTAATAGGCC 18157923 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261462046019248