Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq4481 116 7e-22 seq2038 109 1e-19 >seq4481 Length=5326 Score = 116 bits (128), Expect = 7e-22 Identities = 237/349 (68%), Gaps = 5/349 (1%) Strand=Plus/Minus Query 7164 GAATCCTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATTACCACAAATCC 7223 ||| ||||||| ||| || || ||| |||||| ||||| || || | || | |||||| Sbjct 908 GAAACCTTTCCTATATCTTCCCGTCTCCAATTCGCTGTCCTTGTCAACGACTAGAAATCC 849 Query 7224 ATATTTATT---CCAACATGCCGAGCATAAA-TCTCTGAATGAGTTGTATGGCATGTCCG 7279 ||| ||||| ||| ||| || || | ||| |||| | ||| | |||||| | Sbjct 848 ATACTTATTTTCCCAGCATAGGGAACACATTGTCT-TGAACGTATTGAAACTCATGTCTG 790 Query 7280 TATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGA 7339 | | | ||||||||| |||| ||| | ||| | || ||||| || | || | Sbjct 789 TTGTTATATGATCATCGTAAACATGACGTAAATTGGTATCGTCTTGCTTAAAAATTACCA 730 Query 7340 GAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGAT 7399 || || | ||| |||||||||| ||||| ||||| || | ||||| || | |||| Sbjct 729 AAAGATTCGAATTGTCTCTAATCAACTGCTTCGGTATACGACTGTAAGTCTGTCCCAGAT 670 Query 7400 AGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTT 7459 |||| | || || | ||||||| ||||| | |||| | || || ||| || | Sbjct 669 AGAAACAATCGACGCCACTGTGTCGTCCCATACTGAAATATTCTCGCATTACATCATGCT 610 Query 7460 TTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATC 7508 | || ||||| ||||||||||| || | | ||| || ||| ||||| Sbjct 609 TATCGCAAGCTACATCGTCAAAAATGAAAATGGAATTCTTCTTCGCATC 561 >seq2038 Length=18218 Score = 109 bits (120), Expect = 1e-19 Identities = 229/339 (68%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 7153 ATGAAGCAGTAGAATCCTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATT 7212 || ||| || ||| ||||||| || | ||| | | || || || || || ||||| Sbjct 12941 ATAAAGGTGTCGAACCCTTTCCTGTATCGACCGTTGTCCATGTCGCTATCCTTGTCTATC 12882 Query 7213 ACCACAAATCCATATTTATTC------CAACATGCCGAGCATAAATCTCTGAATGAGTTG 7266 |||| ||| || || || | | ||||| | ||| | | | |||| | | Sbjct 12881 ACCAAAAAGCCGTACTTGTCCTTCGACCAACACAGGGCGCACATACTTTTGAAATCCTCG 12822 Query 7267 TATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGA 7326 | ||||| ||||| || || ||||| || || | || |||| ||||| || || || Sbjct 12821 AAGGGCATATCCGTGTTCACGTGATCGTCGTACACGTGTTTCAAGTTCATCTCGTCCTGT 12762 Query 7327 CGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAA 7386 |||||||| |||| | ||| || || || | || || || || || || || | || Sbjct 12761 CGGAACAGAACGATCAGGTTGGCGTTGTCGCGGATGAGTTGTTTAGGAATCCGACTGTAC 12702 Query 7387 GTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTG 7446 |||||||| | ||| || ||||| ||| ||||||||||||||| |||| | | Sbjct 12701 GTTTGACACAAATAAAAACTGTCCACAGAACTGTGTCGACCCATGCTGAAATATTCCCGC 12642 Query 7447 AT-GTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 || ||| | |||||| || ||||| |||||||| || || Sbjct 12641 ATCGTG-TTCTGTTTGTCGCAAGCCACATCGTCGAAAAT 12604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97963756795992