Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_007055.1 Length=43681 Score E Sequences producing significant alignments: (Bits) Value seq1219 93.3 1e-14 >seq1219 Length=45996 Score = 93.3 bits (102), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 35159 GTAGCGACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAA 35218 ||||||| ||||| || ||||| ||| | | || | || |||||||| ||| Sbjct 33684 GTAGCGAACTTTACACTTGCGGTGAATAGACCATTCAAAAACAGTGAAGGGGAAAACGAA 33625 Query 35219 GCGGACTTTATTAACTGTGTTGTTTTTAGAAAACAAGCAGAAAACGTAAGCAATTACTTG 35278 ||||| || || ||||| || || | | |||| |||||| |||||| || | |||| Sbjct 33624 GCGGATTTCATCAACTGCGTAGTGTGGCGCAAACCAGCAGAGAACGTAGCTAACTTCTTG 33565 Query 35279 TTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGCAGTTACGAAAACCAA 35338 ||||||||||| ||||| | ||||| | |||| |||||| ||||| || | Sbjct 33564 AAGAAAGGAAGTCTGGCAGGTATAGATGGCAGAGTACAGACACGCAACTACGACAATAAC 33505 Query 35339 GAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGT--GTGCAATTCCTAGAAC 35396 ||||| || | ||||| ||||| || | || | ||| ||||| |||||||| | Sbjct 33504 GAAGGCAAGCGGGTATTTGTGACTGAGGTCG--TGGCAGAGTCGGTGCAGTTCCTAGAGC 33447 Query 35397 CT 35398 || Sbjct 33446 CT 33445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139642428645768