Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_007057.1 Length=43576 Score E Sequences producing significant alignments: (Bits) Value seq1219 98.7 3e-16 >seq1219 Length=45996 Score = 98.7 bits (108), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1404 TACTTTGCTGGTGTCGACTGGGGTTACGAGCACTATGGATCTATTGTGTTAATAGGACGA 1463 || ||||||||||| |||||||||||||||||| |||| || ||||| | || ||| | Sbjct 27045 TATTTTGCTGGTGTTGACTGGGGTTACGAGCACCATGGGTCGATTGTCGTTATGGGAATA 26986 Query 1464 GGT-ATAGATGGTAACTTTTATTTTATTGAGGAGCACGCACACCAATTTAAGTTTATTGA 1522 | | || || | | ||||| | |||||||| ||||| ||| | || ||||| Sbjct 26985 GATGATCGA-GAGCGCGTTTATCTCATTGAGGAACACGCTGCACAACATGAGGAAATTGA 26927 Query 1523 TGATTGGGTGGTTATTGCAAAAGATATTGTAAGTAGATATGGCAATATTAATTTTTACTG 1582 | | |||||| | || ||||| || | | ||| |||||||| || |||||||| Sbjct 26926 TTACTGGGTGAAGAAAGCGAAAGAGATCAAACTGAAATACGGCAATATCAACTTTTACTG 26867 Query 1583 CGATACTGCACGACCTGA 1600 |||||| || |||| || Sbjct 26866 CGATACAGCGAGACCAGA 26849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139306465146288