Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq222 93.3 1e-13 seq228 91.5 4e-13 seq16 91.5 4e-13 seq19 89.7 1e-12 seq52 84.2 6e-11 seq35 84.2 6e-11 >seq222 Length=367058 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| |||||| | ||| | | | || ||||||||||||||||| |||||| Sbjct 24915 ATGTTGCAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 24856 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 24855 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 24796 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 24795 GCTCATGTT 24787 >seq228 Length=356584 Score = 91.5 bits (100), Expect = 4e-13 Identities = 167/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG-CAAA 22841 |||||| ||| ||| | || ||||| ||||| | ||| | | || |||| |||| Sbjct 282115 ATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGTATGGCAAA 282056 Query 22842 GCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGA 22900 || || || | | ||| || ||||| ||||||||||| |||||| | |||| || | Sbjct 282055 --ATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAA 281998 Query 22901 CCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGA 22960 ||||||||||||| || |||||||| || || || || |||| || ||| |||| Sbjct 281997 CCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCAGAAGGCAGCGGTCATGTCGAGTTTGA 281938 Query 22961 ATGATAGT-TCAAAA--CACGGATTTACATTAGATGAAGAATTTTAATTATTTGTATTT 23016 ||| | | ||| | || | ||| | | | ||||| || ||||| ||||| | ||| Sbjct 281937 ATGGGAATGGCAAGACCCATGAATTCAAAATGGATGAGGACTTTTAGGTATTTCTTTTT 281879 >seq16 Length=102030775 Score = 91.5 bits (100), Expect = 4e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || ||||| || || |||||||| ||||||||||| || || | |||| || |||||| Sbjct 57862575 TACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAAACCAAT 57862634 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 |||||||| ||||||||||| || || ||||| || Sbjct 57862635 TTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 57862669 >seq19 Length=70911690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG-CAAA 22841 |||||| ||| ||| | || ||||| ||||| | ||| | | || |||| |||| Sbjct 44464047 ATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGTATGGCAAA 44464106 Query 22842 GCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGA 22900 || || || | | ||| || ||||| ||||||||||| |||||| | |||| || | Sbjct 44464107 --ATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAA 44464164 Query 22901 CCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||||||||||| || |||||||| || || || || |||| || ||| Sbjct 44464165 CCAATTTCTTCGAGAAGAGAGTTGGGGAGTATCAGAAGGCAGCGGTCATG 44464214 >seq52 Length=1384192 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| ||||| | | | | | | || ||||||||||||||||| |||||| Sbjct 309669 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 309728 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 309729 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 309788 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 309789 GCTCATGTT 309797 >seq35 Length=1921379 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| ||||| | | | | | | || ||||||||||||||||| |||||| Sbjct 438795 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 438854 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 438855 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATT 438914 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 438915 GCTCATGTT 438923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303200835553736