Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq25 109 5e-19 seq13 107 2e-18 seq48 105 6e-18 seq23 102 7e-17 seq19 98.7 8e-16 seq231 93.3 4e-14 seq10 93.3 4e-14 seq126 89.7 4e-13 >seq14 Length=44799946 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||| || ||| | || || | | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || ||| ||| ||||| ||||| |||| |||||| Sbjct 8848070 GATACCATTG-ACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 8848012 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 8848011 GCAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 8847952 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||||||||| Sbjct 8847951 CATTCAGAAAGAGTCTAC 8847934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| | || || || ||||| ||| ||||| || |||| | Sbjct 8848358 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTC- 8848300 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | |||| || || || ||| || || |||||| |||| ||| Sbjct 8848299 -CGACACCATCG-ACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGAC 8848242 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | | || | || ||||||||||| ||||||| | ||| |||| |||||| Sbjct 8848241 CAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTAT 8848182 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || || || | || | || ||||| | || ||||| Sbjct 8848181 AATATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 8848132 >seq25 Length=50193149 Score = 109 bits (120), Expect = 5e-19 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| ||||| ||||| || |||||| | || || |||| | Sbjct 28160263 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 28160322 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | | || ||| |||| || ||| || ||| || |||||||| |||| || Sbjct 28160323 G--ATACCATTG-ACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGAC 28160379 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || |||||| | |||| ||| || |||||| | ||||||| | ||| | ||||||||| Sbjct 28160380 CAACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTAT 28160439 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || ||||||||| | ||| |||| Sbjct 28160440 AATATCCAGAAGGAGTCTACTCTCCATTTGGT 28160471 >seq13 Length=56485995 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||| || ||| | || || | | Sbjct 54271004 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 54271063 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || ||| ||| ||||| ||||| |||| |||||| Sbjct 54271064 GATACCATTG-ACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 54271122 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||| || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 54271123 GCAAATGCTCATCTCTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 54271182 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||||||||| Sbjct 54271183 CATTCAGAAAGAGTCTAC 54271200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| | || || || ||||| ||| ||||| || |||| | Sbjct 54270776 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTC- 54270834 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | |||| || || || ||| || || ||||| |||| ||| Sbjct 54270835 -CGACACCATCG-ACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGAC 54270892 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | | || | || ||||||||||| ||||||| | ||| |||| |||||| Sbjct 54270893 CAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTAT 54270952 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || || || | || | || ||||| | || ||||| Sbjct 54270953 AATATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 54271002 >seq48 Length=1435396 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||||||||| ||||||||||| || | || |||| Sbjct 1250295 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 1250354 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || ||| || || || ||| |||| ||| ||| Sbjct 1250355 GATACAATTGATAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1250414 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || ||||| | ||||||| || |||| | || || |||||| Sbjct 1250415 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 1250474 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||| |||||||| | ||| |||||||| Sbjct 1250475 ATTCAAAAGGAGTCTACCCTCCATTTGGTGTTG 1250507 >seq23 Length=61753794 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||| || |||||| | || |||| Sbjct 39554211 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGTTCG 39554152 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| || ||| || |||||||| |||| || || Sbjct 39554151 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 39554092 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || |||||| | ||||||| | || | ||||||||||| Sbjct 39554091 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAAT 39554032 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || ||||||||| | ||| |||| Sbjct 39554031 ATCCAGAAGGAGTCTACTCTCCATTTGGT 39554003 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||||||||| ||||||||||| || | || |||| Sbjct 11030588 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 11030647 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || ||| || || || ||| |||| || ||| Sbjct 11030648 GATACAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 11030707 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || |||||| | ||||||| || |||| | || || |||||| Sbjct 11030708 CAGAGGTTAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAAC 11030767 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||| || ||||| | ||| |||||||| Sbjct 11030768 ATTCAAAAGGAATCTACCCTCCATTTGGTGTTG 11030800 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || || || || || ||| | ||| ||| | | Sbjct 11030360 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 11030419 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || |||||||| |||| ||| || Sbjct 11030420 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 11030479 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| || |||||||| || |||| | ||| | || || || ||| Sbjct 11030480 CAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAAC 11030539 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || ||||||||||| Sbjct 11030540 ATCCAGAAAGAGTCTAC 11030556 >seq19 Length=70911690 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| || ||||| | ||| ||| Sbjct 3137722 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 3137663 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| |||| |||| |||||| || || || || ||||| | || ||||| Sbjct 3137662 GACACCGTTG-ACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 3137604 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| |||||||| | ||||||| | || | || |||||||| Sbjct 3137603 GCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAA 3137544 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||||||||| | || ||||| | || | |||||||| Sbjct 3137543 TATCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 3137496 >seq231 Length=354869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| |||| ||||||||| || | |||| ||| || || ||| ||||| Sbjct 77381 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 77440 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | || || Sbjct 77441 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTTA 77500 Query 115499 AGATTGCGAGGAGGAA 115514 || | ||||||||| Sbjct 77501 AGGCTTAGAGGAGGAA 77516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| ||||||||| || | |||| ||| || || ||| | ||| Sbjct 72201 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 72260 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACT 115483 |||| | |||| | || ||||||||||| ||||| ||||| ||| Sbjct 72261 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACT 72305 >seq10 Length=91128445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| |||| ||||||||| || | |||| ||| || || ||| ||||| Sbjct 62680663 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 62680722 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | || || Sbjct 62680723 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTTA 62680782 Query 115499 AGATTGCGAGGAGGAA 115514 || | ||||||||| Sbjct 62680783 AGGCTTAGAGGAGGAA 62680798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| ||||||||| || | |||| ||| || || ||| | ||| Sbjct 62675387 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 62675446 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | || || Sbjct 62675447 GATGGCCGAACCCTCGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTTA 62675506 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 62675507 AGGCTTAGGGGAGGAA 62675522 >seq126 Length=664146 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/158 (75%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||| | | Sbjct 151800 ATGCAAATCTTTGTCAAAACTCTCACAGGAAAGACCATTACCCTCGAGGTTGAGACTTTC 151741 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| | || || || | | |||| |||| |||||| Sbjct 151740 GACACCATT-GACAATGTGAAAGACAAGAT--CC--AAGACAAGGGATCCC--ATGATCA 151688 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATG 115442 |||||| ||||||| ||| || || ||| | ||||||| Sbjct 151687 GCAAAGGCTTATTTTTGCTGGAAAGCAACTCGAAGATG 151650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425296577865760