Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq143 147 4e-30 seq10 96.9 7e-15 seq19 95.1 2e-14 seq1487 93.3 9e-14 seq69 93.3 9e-14 seq68 93.3 9e-14 seq18 93.3 9e-14 seq14 93.3 9e-14 seq13 93.3 9e-14 seq11 93.3 9e-14 seq8 93.3 9e-14 seq49 91.5 3e-13 seq37 91.5 3e-13 seq6 91.5 3e-13 seq1094 87.8 4e-12 seq564 87.8 4e-12 seq25 87.8 4e-12 seq5 84.2 4e-11 >seq143 Length=592694 Score = 147 bits (162), Expect = 4e-30 Identities = 207/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||||| | ||||| || ||||| || || | ||| | | | || ||||| Sbjct 232112 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGACCTTCAAAGATCAATTCCT 232053 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | |||| |||||||| ||||| || | |||||||| || || |||||| || Sbjct 232052 TCCATGGTTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTCTGTGCTTTCAAGAGG 231993 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || | || || || ||||| |||| ||||| |||||||| || || ||||| Sbjct 231992 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 231933 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||| |||||||||||||| || ||||||| || ||||| ||||| | |||| Sbjct 231932 TACCATCATGGTGAGCAGAGTCTTTGTAGTACCATTGTTGGAATGGCCCAGGATTTTGTG 231873 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||||||||| ||| | || | || ||||| |||||| ||||| Sbjct 231872 GGCAGTAACAACATAAACCTTCTTCGTCCTGGGGGTCAATTTGGTACTCGT 231822 >seq10 Length=91128445 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 727636 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTCGTGGTCGTGGGTTCG 727577 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 727576 AGCCCCAC 727569 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 43298377 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43298436 Query 142563 CCCCAC 142568 |||||| Sbjct 43298437 CCCCAC 43298442 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 45673314 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 45673373 Query 142563 CCCCAC 142568 |||||| Sbjct 45673374 CCCCAC 45673379 >seq19 Length=70911690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 26660233 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 26660292 Query 142562 GCCCCAC 142568 ||||||| Sbjct 26660293 GCCCCAC 26660299 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 58458074 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 58458133 Query 142563 CCCCAC 142568 |||||| Sbjct 58458134 CCCCAC 58458139 >seq1487 Length=32925 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 315 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 374 Query 142563 CCCCAC 142568 |||||| Sbjct 375 CCCCAC 380 >seq69 Length=1085994 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 329047 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 329106 Query 142563 CCCCAC 142568 |||||| Sbjct 329107 CCCCAC 329112 >seq68 Length=1133209 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 558564 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 558505 Query 142563 CCCCAC 142568 |||||| Sbjct 558504 CCCCAC 558499 >seq18 Length=57801308 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 490258 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 490199 Query 142563 CCCCAC 142568 |||||| Sbjct 490198 CCCCAC 490193 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 497396 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 497337 Query 142563 CCCCAC 142568 |||||| Sbjct 497336 CCCCAC 497331 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10443678 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10443619 Query 142563 CCCCAC 142568 |||||| Sbjct 10443618 CCCCAC 10443613 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 25863658 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25863599 Query 142563 CCCCAC 142568 |||||| Sbjct 25863598 CCCCAC 25863593 >seq14 Length=44799946 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 8097297 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8097356 Query 142563 CCCCAC 142568 |||||| Sbjct 8097357 CCCCAC 8097362 >seq13 Length=56485995 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 55208510 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 55208451 Query 142563 CCCCAC 142568 |||||| Sbjct 55208450 CCCCAC 55208445 >seq11 Length=95484752 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 65042078 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 65042137 Query 142563 CCCCAC 142568 |||||| Sbjct 65042138 CCCCAC 65042143 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 65042231 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65042290 Query 142564 CCCAC 142568 ||||| Sbjct 65042291 CCCAC 65042295 >seq8 Length=100353538 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 42437241 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42437182 Query 142563 CCCCAC 142568 |||||| Sbjct 42437181 CCCCAC 42437176 >seq49 Length=1433348 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1395069 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1395010 Query 142564 CCCAC 142568 ||||| Sbjct 1395009 CCCAC 1395005 >seq37 Length=1802133 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 154619 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 154560 Query 142564 CCCAC 142568 ||||| Sbjct 154559 CCCAC 154555 >seq6 Length=79162310 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 62079959 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 62080018 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 62080019 AGCCCCAC 62080026 >seq1094 Length=54050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| | ||||||| || ||||||||||||||||| Sbjct 3687 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAACGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3746 Query 142563 CCCCAC 142568 |||||| Sbjct 3747 CCCCAC 3752 >seq564 Length=137050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTC-CATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCT 19768 || || ||||| || ||||| || | | | ||| | ||| |||||||| || ||||| Sbjct 112179 GCCCTGTTCCTGGGGCGCGGCTTCTCCTTC-CCGCTCGCCCTGGAAGGCGCGCTGAAGCT 112237 Query 19769 CAAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCC 19828 |||||||||||| ||||||||||| || ||| |||| ||||| || ||||||||||| Sbjct 112238 CAAGGAGATCAGCTACATCCACGCCGAAGGTTACGCGGCGGGCGAGCTGAAGCACGGGCC 112297 >seq25 Length=50193149 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 44260823 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAT 44260764 Query 142563 CCCCAC 142568 |||||| Sbjct 44260763 CCCCAC 44260758 >seq5 Length=56898656 Score = 84.2 bits (92), Expect = 4e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||| |||||||| Sbjct 52302062 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGT-GGTTCGAG 52302004 Query 142563 CCCCAC 142568 |||||| Sbjct 52302003 CCCCAC 52301998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027716328533468