Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_008723.1 Length=44041 Score E Sequences producing significant alignments: (Bits) Value seq1219 98.7 3e-16 >seq1219 Length=45996 Score = 98.7 bits (108), Expect = 3e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 29429 CCCATCATAACACGCTCTCTAATGGTTTCTCTTTCCCACTCTGCCATAGCGCCAACTAAC 29488 ||||| ||||||| || | | ||||||||||||| | ||||| ||| |||| | Sbjct 45666 CCCATAGTAACACGTTCGCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCAGA 45607 Query 29489 GTAACAAACAGTCTACCCATAGCTGTAGATGTATCATAAACTTCAGTAGCACTTCTGAAT 29548 |||| ||| || | |||||||||||||| ||| ||||||||||| ||||||| ||| || Sbjct 45606 GTAATAAAAAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCAC-TCTTAAA 45548 Query 29549 GCTAC-GTTATTCTGTTCGAATA 29570 ||| ||||| || || |||| Sbjct 45547 TTTACAATTATTTTGCTCAAATA 45525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140794303501128