Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq48 91.5 1e-13 seq25 86.0 4e-12 seq11 86.0 4e-12 seq1 86.0 4e-12 seq23 84.2 2e-11 seq19 82.4 5e-11 >seq48 Length=1435396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| || || ||| | || |||| | | Sbjct 1229300 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAAAGCTCG 1229359 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || ||||| || | ||| | |||| Sbjct 1229360 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCAGACCAG 1229419 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || || |||||||||||| | || |||| |||||||| Sbjct 1229420 CAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCCATACCCTGGCTGATTACAAC 1229479 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| || || || ||| |||| | || | || |||||| Sbjct 1229480 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTCGTGGAGGA 1229527 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || ||||| || || ||| | ||| |||| | | Sbjct 1250067 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 1250126 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || ||||| ||| | ||| ||||| Sbjct 1250127 GACACAATTGATAATATCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 1250186 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| |||||||| || ||| || | || || ||||| Sbjct 1250187 CAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACAAC 1250246 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 1250247 ATCCAGAAAGAGTCTACCCTCCA 1250269 >seq25 Length=50193149 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | || | |||| || || || |||||||||||||| || || ||| Sbjct 28160584 GACAAGGAGGGTATCCCCCCAGACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTCGAA 28160643 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | || ||||||| |||||||| || ||||| ||||| |||||| |||| || Sbjct 28160644 GATGGTAGGACATTGGCCGACTACAATATCCAAAAGGAGTCTACCCTTCATTTGGTGTTG 28160703 Query 22047 CG 22048 || Sbjct 28160704 CG 28160705 >seq11 Length=95484752 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||| || |||| ||| | Sbjct 29434889 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 29434948 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || ||||| || ||| || ||||| || | || | | || Sbjct 29434949 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 29435008 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || || ||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 29435009 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 29435068 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||| || | || || ||| | || || || Sbjct 29435069 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 29435115 >seq1 Length=92291805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 4408888 AATGCAGATATTTGTGAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTGGAGAGCTC 4408829 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | || || ||| || || ||||| | ||| |||| Sbjct 4408828 GGACACGATTGACAATGTGAAATCTAAGATTCAGGACAAGGAGGGGATTCCTCCGGACCA 4408769 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || || | || ||| |||| | || || ||||| Sbjct 4408768 GCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGAACTTTAGCAGACTACAA 4408709 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||| ||||| ||| Sbjct 4408708 TATTCAGAAGGAATCCACTCTGCAT 4408684 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || ||||| ||||| ||| | || |||| | Sbjct 4409799 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGTTGGAAAGTTCT 4409740 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || || || || | ||| | ||||| Sbjct 4409739 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 4409680 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || |||||||| |||||| ||| | || |||||||| Sbjct 4409679 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 4409620 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 4409619 ATCCAGAAAGAGTCTACCCTCCA 4409597 >seq23 Length=61753794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | ||||| || || || ||||||||||| |||| ||| | | Sbjct 11031043 AATGCAGATATTTGTGAAAACTTTGACCGGTAAAACCATTACGTTGGAGGTGGAGAGCTC 11031102 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||||| | || ||||| || || ||||| |||||| | ||||| | Sbjct 11031103 CGACACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCTG---A 11031159 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| | || ||||| || || || || || || | ||| | || || || Sbjct 11031160 CCAACAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTA 11031219 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || || ||| |||| || || | ||||||| Sbjct 11031220 TAACATTCAAAAGGAGTCGACCCTGCATTTGGTTTTGCGCCTTAGAGGAGG 11031270 >seq19 Length=70911690 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || ||||| ||||| ||| | || |||| | Sbjct 3146612 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGTTGGAAAGTTCT 3146553 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || || || || | ||| | ||||| Sbjct 3146552 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 3146493 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || ||||| || |||||| |||| | || |||||||| Sbjct 3146492 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 3146433 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 3146432 ATCCAGAAAGAGTCTACCCTCCA 3146410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358084872218392