Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_008799.1 Length=43282 Score E Sequences producing significant alignments: (Bits) Value seq1219 95.1 3e-15 >seq1219 Length=45996 Score = 95.1 bits (104), Expect = 3e-15 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 18400 TACTTTGCTGGTGTCGACTGGGGTTACGAGCACTATGGATCTATTGTGTTAATAGGACGA 18459 || ||||||||||| |||||||||||||||||| |||| || ||||| | || ||| | Sbjct 27045 TATTTTGCTGGTGTTGACTGGGGTTACGAGCACCATGGGTCGATTGTCGTTATGGGAATA 26986 Query 18460 GGT-ATAGATGGTAACTTTTATTTTATTGAGGAGCA---TGCACACCAATTTAAGTTTAT 18515 | | || || | | ||||| | |||||||| || |||||| || | || || Sbjct 26985 GATGATCGA-GAGCGCGTTTATCTCATTGAGGAACACGCTGCACAACA---TGAGGAAAT 26930 Query 18516 TGATGATTGGGTGGTTATTGCAAAAGATATTGTAAGTAGATATGGCAATATTAATTTTTA 18575 |||| | |||||| | || ||||| || | | ||| |||||||| || ||||| Sbjct 26929 TGATTACTGGGTGAAGAAAGCGAAAGAGATCAAACTGAAATACGGCAATATCAACTTTTA 26870 Query 18576 CTGCGATACTGCACGACCTGA 18596 ||||||||| || |||| || Sbjct 26869 CTGCGATACAGCGAGACCAGA 26849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138365767347744