Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq22 147 4e-30 seq19 93.3 8e-14 >seq22 Length=61129363 Score = 147 bits (162), Expect = 4e-30 Identities = 397/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||||||| ||||||||| || |||||||| Sbjct 6288006 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 6287947 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| ||| || |||||||| ||| || || || ||||| || || || || || Sbjct 6287946 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 6287888 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || ||||| ||| ||| || Sbjct 6287887 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 6287828 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| ||||| |||||| |||| || | || || || || ||||| Sbjct 6287827 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 6287768 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || | ||| |||| ||| || | | || ||| | Sbjct 6287767 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 6287711 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || || ||||| ||||| || ||| |||| || ||| | || ||| || Sbjct 6287710 CGTAGAAGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 6287651 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||||| | || ||||| ||||| | ||| | || || || || || | Sbjct 6287650 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 6287591 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | |||| || |||| | ||||| || Sbjct 6287590 CGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAGCGCGT 6287534 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 ||| || | | ||| || ||||| || |||| ||||||| | | || | | || | Sbjct 6287533 GAGGGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTCC 6287475 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | ||||||| ||| ||| || | Sbjct 6287474 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCGGTACATCGAGTTCGTAGCGG 6287415 Query 43021 A 43021 | Sbjct 6287414 A 6287414 >seq19 Length=70911690 Score = 93.3 bits (102), Expect = 8e-14 Identities = 289/444 (65%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || || ||||| || || || || || | |||||| Sbjct 44463450 CTTGCCTTCTTCGCCGCATCCGATGGCATCGTTCTAGAAAATCTCGCTGTTCGCTTCATG 44463509 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || | |||||||| ||| || || || ||||| || ||||| ||||| Sbjct 44463510 AAAGAGGTCCAAATCGCGGAGGCGCG-TGCATTTTATGGATTCCAAATCGCCATCGAGAA 44463568 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||||||| |||| || ||| | || || || ||| || ||| Sbjct 44463569 TATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCGAAAA 44463628 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| | || | || ||| |||| ||| | || || || || ||||| Sbjct 44463629 AAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGC 44463688 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || || | | || | ||| || | | || || | Sbjct 44463689 TTTGAAATGGATCGACGG---CGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTG 44463745 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || ||||| || ||||| ||| ||| | || || ||| | || || | Sbjct 44463746 CGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAAAGCGCGG 44463805 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| ||| | || ||||| ||||| | ||| | || || || || ||| | Sbjct 44463806 GTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTG 44463865 Query 42842 GGACTTTGCCTGCCTCCTGTTCTC 42865 |||||||| ||| | |||| ||| Sbjct 44463866 CGACTTTGCTTGCTTGCTGTACTC 44463889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944231214812480