Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_009540.1 Length=49902 Score E Sequences producing significant alignments: (Bits) Value seq5259 1150 0.0 seq9 280 5e-71 >seq5259 Length=4105 Score = 1150 bits (1274), Expect = 0.0 Identities = 767/845 (91%), Gaps = 20/845 (2%) Strand=Plus/Minus Query 34047 GCGTCCATTGCAGCCGTACCAGTTCGATATAAAGCCATAATTACACCTCATTTTATTCAT 34106 || ||||||| |||||||||||| |||||||||||||||||| |||||||| ||| | Sbjct 1300 GCATCCATTGTAGCCGTACCAGTGCGATATAAAGCCATAATTTCACCTCATAGCATTTTT 1241 Query 34107 TG--AAACA---GTGTAGTGATTATGCGATATTGCTATGTTACATGCAAT-AAAAACCCC 34160 || ||| | || || ||||||| | | | ||||||||||||| ||||||||| Sbjct 1240 TGTTAAAAATAGGTCATGTAATTATGCTACAGCCATTTGTTACATGCAATAAAAAACCCC 1181 Query 34161 GCCTTAGCGGGGT-TCGTCAACTACAACGAGAAGTCAA--TGAAACAGATTCATCGAAAA 34217 || | ||||||| || ||| || |||| |||| || || || || | | ||| Sbjct 1180 GCAATTGCGGGGTAATGTTAACGACGACGAAAAGTAAACTTG---CATAT--AACAGAAA 1126 Query 34218 GTGTTAG----TAGCAGGATT--AATATTATAATAAGTCACTTGCCTTGTAAAGTCTCCG 34271 |||| || | || | | ||||||||| |||||| ||||| |||||||| |||| Sbjct 1125 GTGTAAGGGTCAACCAACAATAAAATATTATAGTAAGTCGCTTGCTTTGTAAAGCCTCCT 1066 Query 34272 CTCTATTCCATTTTTGAATTTACCGTTAACTGGTAACATTACGTCTAATTCGCGATCATC 34331 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1065 CTCTATTCCATTTTTGAATTTACCGTTAACTGGTAACATTACGTCTAATTCTCGATCATC 1006 Query 34332 GGCAGCAATCAAAGTATCGCGATCATTAGCATGGCACACAACGCGCATTTTACGATCTCC 34391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 GGCAGCAATCAAAGTATCGCGATCATTAGCATGGCACACAACGCGCATTTTACGATCTCC 946 Query 34392 TTTGTATCTGTATGCAACAATTTCAAGATTTGAAGGTGAGAAACACGCCCATACTTCTTG 34451 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 TTTGTATCTGTATGAAACAATTTCAAGATTTGAAGGTGAGAAACACGCCCATACTTCTTG 886 Query 34452 CCCCGTCGCCAGGTGTATATGTTGCGCATCAATCCAATCAACGCAAAGGTAAATTGTTTT 34511 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 ACCCGTCGCCAGGTGTATATGTTGCGCATCAATCCAATCAACGCAAAGGTAAATTGTTTT 826 Query 34512 GTCAGTCTTGCCAGTTACCGCAACGCTTCCTCGCGTGTAATCTTTCGCGTAAAAACTGCT 34571 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 825 GTCAGTCTTGCCAGTTACCGCAACGCTTCCGCGCGTGTAATCTTTCGCGTAAAAACTGCT 766 Query 34572 TTTACCTTCCTCGTTGACGAAAAGAATATTGCACATATCATCATCCAATTCATCACTATG 34631 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 TTTACCTTCCTCATTGACGAAAAGAATATTGCACATATCATCATCCAATTCATCACTATG 706 Query 34632 CACCAGGTGGCAAGGAATGGCGTGTATATGCTCGCAATATCCATTGTCATGAGTTTTTAC 34691 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 705 CACCATGTGGCAAGTGATAGCGTGTATATGCTCGCAATATCCATTGTCATGAGTTTTTAC 646 Query 34692 GCCAACTTGATACGATTCGCCGTCTAATGGATAAAACGCCTCAAAAACGCTTAGATTTGT 34751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GCCAACTTGATACGATTCGCCGTCTAATGGATAAAACGCCTCAAAAACGCTTAGATTTGT 586 Query 34752 TATTTCCATGCGTTCAGTTTTATCCATCACCTCAACACATTTTTCATGTGGTGCTTGCGA 34811 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 585 TATTTCCATGCGTTCAGTTTTATCCATCACCTCAACACATTTTTCATGAGGTGCTTGCGA 526 Query 34812 TCCGAAATTGTAACCTGAGTCACGTTTTGCCGCTTTGTTAGCCTTGTTGACAACCTCAAC 34871 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 TCCGAAATTGTAACCGGAGTCACGTTTTGCCGCTTTGTTAGCCTTGTTGACAACCTCAAC 466 Query 34872 AGGAA 34876 |||| Sbjct 465 GGGAA 461 Score = 605 bits (670), Expect = 9e-169 Identities = 349/358 (97%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 34933 ATGCGCATGAATAATCCGATCCCTGAATCATTCCCGCATTGGTTGCAAATGTTGCCGCCG 34992 || |||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 358 ATACGCATGAACAATCCGATCCCTGAATCATTGCCGCACTGGTTGCAAATGTTTCCGCCG 299 Query 34993 TCGCCTTTCTCGTTGATTTTGTCAGTCCAACGAAAGCGATCTTTACCGCCGCAATAAGGG 35052 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 298 TCGCCTTTCTCGTTGATTTTGTCAGTCCAGCGAAAGCGATCTTTACCGCCGCAATAAGGG 239 Query 35053 CAAGGCTGATGCTTTCCGTTAAAGGTTAATTGAGGAATATCGCAAAGTTTCATTAATGCC 35112 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CAAGGCTGGTGTTTTCCGTTAAAGGTTAATTGAGGAATATCGCAAAGTTTCATTAATGCC 179 Query 35113 GCTTGCCACATGCCGCGCATCTTTGGGATTACTTCTTCTTTTTGATAATGCATTTCTCAA 35172 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 178 GCTTGCCACATGCCGCGCATCTTTGGGATCACTTCTTCTTTTTGATAATGCATTTCTCAA 119 Query 35173 CCTCCAAATAAAAAACCTGGCACGATGATAAACCATGCCAGGCCGGAATTTTTAGCAATC 35232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CCTCCAAATAAAAAACCTGGCACGATGATAAACCATGCCAGGCCGGAATTTTTAGCAATC 59 Query 35233 AGTGCTATCGACGGAAATCACAACGCGTTTCTTCTGATTGGCTTCCTTTGCTTTGCGC 35290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 AGTGCTATCGACGGAAATCACAACGCGTTTCTTCTGATTGGCTTCCTTTGCTTTGCGC 1 Score = 605 bits (670), Expect = 9e-169 Identities = 424/483 (88%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 31185 AAGGCTCGCGGCTTTAATCCGGCTGAACCAGCGGCGAATGTTGCAAAGAATGAAAAGGTT 31244 ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4048 AAGGCTCTTGGCTTCAATCCGGCTGAACCAGCGGCTAATGTTGCAAAGAATGAAAAGGTT 3989 Query 31245 GAAAAGGAACCGCAACAGGAAGTAAAATCACAGTCTATCACTGACTTTGAATAATAATTT 31304 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3988 GAAAAGGAACCGCAACAGGAAGTAAAATCACAGCCTATCACTGACTTTGAATAATAATTT 3929 Query 31305 GCGGGGCGTAATGCCCCGATAAGGAAAAATAATGCACGTTATCACTGGTGAAATTCGCAA 31364 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3928 GCGGGGCGTAATGCCACGATAAGGAAAAATAATGCACGTTATCACTGGTGAAATTCGCAA 3869 Query 31365 AGAGCCTTTTGTTAAGCAAGGGCAAAACGGCACACTTTATATTGTTGAGCTTTCAGAATC 31424 |||||||| |||||||||||| |||||| || | || || ||||| | | ||||| Sbjct 3868 AGAGCCTTATGTTAAGCAAGGCGCAAACGGAACTTTATACATCGTTGAATTAGCGGAATC 3809 Query 31425 ATATAAAGATCGAGAGGGTAACAGACAATACACAAATTACAAATTCTTCTTTAATGCAAA 31484 ||||||||||| || ||||| |||||||||| |||||||| || ||||||||||| || Sbjct 3808 GTATAAAGATCGCGAAGGTAATCGACAATACACCAATTACAAGTTTTTCTTTAATGCCAA 3749 Query 31485 AAGCGAGGGAATGAATAATTGGTATCGTGAGGCATTCCAGCAGGGTAAAATTATTTCTGT 31544 |||||| ||||||||||| ||||||| || || |||||| |||||| || || || Sbjct 3748 AAGCGACGGAATGAATAAATGGTATCTCGATGCGTTCCAGGTCGGTAAAGTTGTTCTAGT 3689 Query 31545 ATCTTGCGACCAGTTGCGCATTGATAGCAGCGAATATAACGGGCAGATTTATAACACTCT 31604 |||||||| ||||| ||||||||||||| || || ||||| || ||||||||||| || Sbjct 3688 GTCTTGCGATCAGTTACGCATTGATAGCAATGAGTACAACGGACAAATTTATAACACGCT 3629 Query 31605 AACAAGTGCCGGATTTGCTAACTTGCAATTTAGCCAGCGCGGTGAAAGTCAAGCACCACA 31664 ||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 3628 AACAAGTGCTGGATTTGCTAACCTGCAATTTAGCCAGCGCGGGGAAGGTCAAGCACCACA 3569 Query 31665 ACA 31667 || Sbjct 3568 GCA 3566 Score = 464 bits (514), Expect = 2e-126 Identities = 319/360 (89%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 33684 TCAGTTTTTTGCGCGGAAGCCTCAGCGCGAGCAACAAGATCCTGTATTGTTTTTAAATCA 33743 || |||||||| |||||||||||||||| ||||| ||||||||||| ||| | | | Sbjct 1747 TCCGTTTTTTGAGCGGAAGCCTCAGCGCTAGCAATAAGATCCTGTAACTGTTTAAGGTAA 1688 Query 33744 AAGTTTTTGAAAAATTCAATCGCTTCCTCAATAACAGTTTCTTTACTTTGGTAATAACGC 33803 ||||||||||| |||||||| ||||||||||| ||| |||||| |||||||| |||||| Sbjct 1687 AAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACGC 1628 Query 33804 AGCGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGATC 33863 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1627 AGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGATC 1568 Query 33864 ACATAATTTCCGTTTTCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCCGTGTCG 33923 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1567 ACATAATTTACGTTTTCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTGTATCG 1508 Query 33924 CTTACAATATCGCTAATCACAGCCAATTTAAGAGGCGATGTGAGAAATACGATTGTTGCG 33983 |||||||||||||| || || |||| ||| | ||| | || | |||||||||||||||| Sbjct 1507 CTTACAATATCGCTGATAACCGCCAGTTTTAAAGGAGTGGTTAAAAATACGATTGTTGCG 1448 Query 33984 CCAGTACGGATAAGAGAAAGAGGATCACGCCATTTTGTGCCAGTACCAATAATAACGCCT 34043 ||||| || ||||||||||| || |||||||||||||||||||||||| | ||||| ||| Sbjct 1447 CCAGTGCGAATAAGAGAAAGCGGCTCACGCCATTTTGTGCCAGTACCAGTGATAACACCT 1388 Score = 159 bits (176), Expect = 1e-34 Identities = 117/136 (86%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33650 GTTTTTTAATTGTTCAGTCGCGGCTCGGTCTGCATCAGTTTTTTGCGCGGAAGCCTCAGC 33709 |||||||||||| ||||| ||||| || |||||||| |||||||| |||||||||||||| Sbjct 1882 GTTTTTTAATTGCTCAGTTGCGGCGCGATCTGCATCCGTTTTTTGAGCGGAAGCCTCAGC 1823 Query 33710 GCGAGCAACAAGATCCTGTATTGTTTTTAAATCAAAGTTTTTGAAAAATTCAATCGCTTC 33769 || ||||| ||||||||||| ||| | | |||||||||||| |||||||| ||||| Sbjct 1822 GCTAGCAATAAGATCCTGTAACTGTTTAAGGTAAAAGTTTTTGAAGAATTCAATTGCTTC 1763 Query 33770 CTCAATAACAGTTTCT 33785 |||||| ||||||||| Sbjct 1762 CTCAATTACAGTTTCT 1747 Score = 104 bits (114), Expect = 7e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 33351 TCTTTGTTTGCAAGATCATTAAGGTTTTGATCCTTATGCAGCAGATTTTCAGGTTGCACC 33410 || || |||| || |||||||||||||||||| |||| ||| | |||||||| | | | Sbjct 2199 TCCTTATTTGGAACATCATTAAGGTTTTGATCTTTATTCAGTAAGTTTTCAGGGTTAATC 2140 Query 33411 TGTTGCGCCCATTGGCGAGCTTCATCACGCGC 33442 ||||||||||||||| |||||||||||||||| Sbjct 2139 TGTTGCGCCCATTGGTGAGCTTCATCACGCGC 2108 Score = 98.7 bits (108), Expect = 3e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31201 ATCCGGCTGAACCAGCGGCGAATGTTGCAAAGAATGAAAAGGTTGAAAAGGAACCGCAA 31259 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 4105 ATCCGGCTGAACCAGCGGCTAATGTTGCAAAGAATGAAAAGGGTGAAAAGGAACCGCAA 4047 Score = 93.3 bits (102), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 33474 TCAGTAACGGCAGAATCCTTAATCTGTTGCGTTTGGTTTTTTATTGCGTCCGTGTCTGCC 33533 || || || || ||||| ||||| | ||||||||||||||| |||||| ||||||| || Sbjct 1992 TCTGTTACTGCTGAATCTTTAATATTTTGCGTTTGGTTTTTAATTGCGCTCGTGTCTTCC 1933 Query 33534 TTAATCTGATTGGTTTCAGCAACAGCGGCAT 33564 |||||||| | |||||| ||||||||||| Sbjct 1932 TTAATCTGTTGCGTTTCATTAACAGCGGCAT 1902 >seq9 Length=117247901 Score = 280 bits (310), Expect = 5e-71 Identities = 197/225 (88%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 46035 ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCAACAGACCGCCAAACGCGCAAGGA 46094 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 108216539 ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCAACAGACCGCCAAATGCGCAAGGA 108216598 Query 46095 TGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGCTAACAGGATTCTCGATC 46154 ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 108216599 TGAAAGATAAAATCAGGTTGCCTCCACATCGACGACAGGACGCTAACAGGATTCTCGATC 108216658 Query 46155 ACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCTTGCATGTTGAAACTGCC 46214 | |||||| || || |||| ||||||||| | || |||||||| ||| ||| ||| Sbjct 108216659 ATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCCGTTTCAACCGCC 108216718 Query 46215 TTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGTGA 46259 || | |||||| |||||||||||||||||||| | ||||||| Sbjct 108216719 TTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTGCAAAGTGA 108216763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159547466076864