Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_009815.1 Length=38124 Score E Sequences producing significant alignments: (Bits) Value seq1219 141 2e-29 >seq1219 Length=45996 Score = 141 bits (156), Expect = 2e-29 Identities = 182/248 (73%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 34988 CGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAATCA---AAACGGAG 35044 |||| || |||| ||||| || || || ||| | |||| || || || ||| Sbjct 33689 CGGCGGTAGCGAACTTTACACTTGCGGTGAATAGACCATTCAAAAA-CAGTGAAGGGGAA 33631 Query 35045 AACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAACGTTGCTA 35104 ||||| ||| |||||||| || || || || ||||||||||||||||| ||||| |||| Sbjct 33630 AACGA--AGCGGATTTCATCAACTGCGTAGTGTGGCGCAAACCAGCAGAGAACGTAGCTA 33573 Query 35105 ATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGTAATTATG 35164 | ||||||||||||||||| |||| || | ||||| | || || || || || || | Sbjct 33572 ACTTCTTGAAGAAAGGAAGTCTGGCAGGTATAGATGGCAGAGTACAGACACGCAACTACG 33513 Query 35165 AGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCT 35224 | ||||||| || || || || || || |||||||| || || || || || || ||| Sbjct 33512 ACAATAACGAAGGCAAGCGGGTATTTGTGACTGAGGTCGTGGCAGAGTCGGTGCAGTTCC 33453 Query 35225 TAGAACCT 35232 |||| ||| Sbjct 33452 TAGAGCCT 33445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121861960392336