Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq228 84.2 5e-11 >seq228 Length=356584 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||| ||||| || | || Sbjct 283623 TCTGCATGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAGCCGAAGCCT 283564 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAA 242985 | |||||||| ||||||||||| ||| | | || | || | |||||| | || Sbjct 283563 CTTTTTGGACTGCCGAGGAAGTTGATCTCGATTCCGATCTTCCAC-ACTGGC---AAAAT 283508 Query 242986 CTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGAT 243045 || | | ||||||||| || ||||||| || |||| | || ||||| | |||||| Sbjct 283507 CTTACCGCCGACGAACGCCACTTCATCAGTCATGTTCTTGCCTTCTTCGCCGCATCCGAT 283448 Query 243046 GGTATTGTGATGGAAAATCT 243065 || || || | |||||||| Sbjct 283447 GGCATCGTCCTCGAAAATCT 283428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102750732813800