Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_010147.1 Length=43011 Score E Sequences producing significant alignments: (Bits) Value seq1219 288 3e-73 seq4166 260 4e-65 >seq1219 Length=45996 Score = 288 bits (318), Expect = 3e-73 Identities = 541/785 (69%), Gaps = 14/785 (2%) Strand=Plus/Minus Query 17781 CTTCATTATCGGAGGAGCGACACAAGCATCTATCAGACGTAACATACTAGATGATATGGA 17840 ||||||||| ||||| || || || || ||||| | ||||||||||| ||||| ||||| Sbjct 27622 CTTCATTATTGGAGGCGCTACTCACGCGTCTATACGCCGTAACATACTGGATGACATGGA 27563 Query 17841 GTTAATACTAGGTAGAGAGTTGACACTTGATAAATCTAACGCAGTCAAAATATTTGGTAA 17900 || | |||| |||| | | ||||||||| | |||||| | | ||||| || || Sbjct 27562 AACCATCATTGGTAAAGAGCTCAAGCTTGATAAAACGAACGCAATTGAGATATTCGGCAA 27503 Query 17901 TAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAAAAAAGCACGTGGTTTTAC 17960 ||||| ||||| || || || ||| |||| ||||||||||| ||||||||||| Sbjct 27502 CAAAGTTTATGTGTTTGATGGCGCGAACGCGGACAGTTGGAAAAAAGCGCGTGGTTTTAC 27443 Query 17961 TTCAGCAGGTGCTTTTTTAAACGAGGGGACAGCATTACACAATATGTTTATTAAAGAGGT 18020 || || || || | ||||||||||| || || || || ||| ||| | |||||||| Sbjct 27442 CTCTGCTGGCGCGCTATTAAACGAGGGTACCGCGTTGCATGATACCTTTGTGAAAGAGGT 27383 Query 18021 ATTCTCACGTTGTAGTTACAAAGGCGCGAGGATATTAATTGATACCAACCCCGAAAACCC 18080 |||| |||||| |||||||| || | || || || ||||| ||||| || || || Sbjct 27382 TATCTCGCGTTGTTCATACAAAGGATCGCGTATTTTGATAGATACAAACCCGGAGAATCC 27323 Query 18081 GATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTGGTCAACGGTTATCGAATGGAAG 18140 ||| ||||||| |||||||||||||| || ||| | || || || | Sbjct 27322 TGCTCATAGCGTTAAAACGGATTACATTGATAAAGACGGGCAAATGCTACAGACGGGTCG 27263 Query 18141 ACTAAATATCAAAGCATTCCAATTTACTTTGTTTGACAATACATTTTTAGATGAAGAATA 18200 || ||||| ||||||||||| || | | | |||||| | |||| | ||| || || Sbjct 27262 CCTTAATATAAAAGCATTCCACTTCTCGCTCTATGACAACATATTTCTTGATCCCGAGTA 27203 Query 18201 TATTGAATCGATTATCGCAAGTACACCAACAGGAATGTTCACAGATCGTGATATTTATGG 18260 | | || || ||| |||| || || | || |||||||| ||||| ||||| |||| Sbjct 27202 TGTGGAGTCAATTGTCGCCTCCACGCCTTCCGGCATGTTCACGGATCGAGATATCCATGG 27143 Query 18261 TAAGTGGGTTTCTGCTGAAGGTGTTGTATATaaagatttca--aagaaaaagttcattac 18318 | | ||||| | || || |||||| | ||||| || |||| ||| ||||| || || Sbjct 27142 TCATTGGGTGGCGGCAGAGGGTGTTATTTATAAGGACTTCAACAAGGAAAAG--CACTAT 27085 Query 18319 atcaaagaagaagaatttaaaactaaacaaataaaaaggaaaTATGCAGGCGTCGACTGG 18378 ||| || ||||| ||| ||| | || | | | | | ||| || || |||||| Sbjct 27084 ATCTCAGTAGAAGCCTTTCAAAAAGTCCGCATTACTAAGTATTTTGCTGGTGTTGACTGG 27025 Query 18379 GGATATGAGCATTATGGTTCTATTATGGTTGTAGCGGAAGACTTTGACGGAAACAAG--T 18436 || || ||||| |||| || ||| | || || |||| | | || | | | | Sbjct 27024 GGTTACGAGCACCATGGGTCGATTGTCGT--TATGGGAATAGATGATCGAGAGCGCGTTT 26967 Query 18437 ACGTTATTGAAGAACACGC-ACACAGACATAAAGAGATAGATGACTGGGTAGCTATTGCT 18495 | | ||||| |||||||| |||| |||| | || || ||| ||||||| | || Sbjct 26966 ATCTCATTGAGGAACACGCTGCACA-ACATGAGGAAATTGATTACTGGGTGAAGAAAGCG 26908 Query 18496 AAAGGAGTTATAAAAAGGCAT--GGCGATATTCTTTTTTATTGTGATACAGCTAGACCTG 18553 ||| ||| | ||| | || ||| |||| ||||| || |||||||| ||||| | Sbjct 26907 AAA-GAGAT-CAAACTGAAATACGGCAATATCAACTTTTACTGCGATACAGCGAGACCAG 26850 Query 18554 AACAT 18558 | ||| Sbjct 26849 AGCAT 26845 >seq4166 Length=5795 Score = 260 bits (288), Expect = 4e-65 Identities = 577/856 (67%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 17781 CTTCATTATCGGAGGAGCGACACAAGCATCTATCAGACGTAACATACTAGATGATATGGA 17840 ||||||||||||||| || || || || || || | ||||||||| | || || ||||| Sbjct 731 CTTCATTATCGGAGGCGCTACTCACGCGTCGATACGCCGTAACATATTGGACGACATGGA 790 Query 17841 GTTAATACTAGGTAGAGAGTTGACACTTGATAAATCTAACGCAGTCAAAATATTTGGTAA 17900 || | | | |||| ||| ||||||||| | ||||| | | ||||| ||||| Sbjct 791 AACGATCATCGACAAAGAGCTGAAGCTTGATAAAACGAACGCGATTGAGATATTCGGTAA 850 Query 17901 TAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAAAAAAGCACGTGGTTTTAC 17960 ||||| ||||| || || || ||| ||||| ||||| ||||| ||||||||||| Sbjct 851 CAAAGTATATGTGTTTGATGGCGCAAATGCGGATAGTTGGAAGAAAGCGCGTGGTTTTAC 910 Query 17961 TTCAGCAGGTGCTTTTTTAAACGAGGGGACAGCATTACACAATATGTTTATTAAAGAGGT 18020 || || || || | |||||||| || || || || || | | || | |||||||| Sbjct 911 CTCTGCTGGGGCACTGTTAAACGAAGGTACCGCGTTGCATGACACTTTCGTGAAAGAGGT 970 Query 18021 ATTCTCACGTTGTAGTTACAAAGGCGCGAGGATATTAATTGATACCAACCCCGAAAACCC 18080 |||| |||||| ||| |||||| || | || ||||||||||| ||||| || || || Sbjct 971 TATCTCGCGTTGTTCTTATAAAGGCTCGCGTATCTTAATTGATACAAACCCGGAGAATCC 1030 Query 18081 GATGCATCCA--GTTAAAAAAGATTACATTGATAAGAGTGGTCAACGGTTATCGAATGGA 18138 ||| || || |||| ||||| || ||||| || ||| | || || || Sbjct 1031 --TGCTCACAGCGTAAAAACGGATTATATCGATAAAGACGGGCAAATGCTACAGACGGGT 1088 Query 18139 AGACTAAATATCAAAGCATTCCAATTTACTTTGTTTGACAATACATTTTTAGATGAAGAA 18198 | || ||||||||||| || || ||| | | | ||||||| ||| | ||| || Sbjct 1089 CGCCTCAATATCAAAGCGTTTCACTTTTCGCTCTACGACAATATCTTTCTTGATCCTGAG 1148 Query 18199 TATATTGAATCGATTATCGCAAGTACACCAACAGGAATGTTCACAGATCGTGATATTTAT 18258 ||| | || || ||| |||| || || | || |||||||||||||| |||||| || Sbjct 1149 TATGTGGAGTCAATTGTCGCTTCCACGCCTTCCGGCATGTTCACAGATCGGGATATTCAT 1208 Query 18259 GGTAAGTGGGTTTCTGCTGAAGGTGTTGTATATaaagatttcaaagaaaaagttcattac 18318 ||| | ||||| ||||||| |||||| |||| || || ||||| || | || || Sbjct 1209 GGTCATTGGGTGGCTGCTGAGGGTGTTATATACAAGGACTTCAACAAAGACAAGCACTAT 1268 Query 18319 atcaaagaagaagaatttaaaactaaacaaataaaaaggaaaTATGCAGGCGTCGACTGG 18378 ||| || ||||| ||| ||| | || | | | | || || || |||||| Sbjct 1269 ATCTCAGCAGAAGCCTTTGAAAAAGCGCGCATCACCAAATACTTCGCTGGTGTTGACTGG 1328 Query 18379 GGATATGAGCATTATGGTTCTATTATGGTTGTAGCGGAAGACTT--TGA-CGGAAACAAG 18435 || |||||||| |||| || || ||||| || | || ||| ||| | | || Sbjct 1329 GGCTATGAGCACCATGGATC---CATCGTTGTCATGG--GTATTGATGATCGGGAGCGAG 1383 Query 18436 --TACGTTATTGAAGAACACGC-ACACAGACATAAAGAGATAGATGACTGGGTAGCTATT 18492 || | || || |||||||| |||||| ||| | || || ||| | ||||| | Sbjct 1384 TATATCTCATCGAGGAACACGCTACACAG-CATGAGGAAATCGATTATTGGGTGAAGAAA 1442 Query 18493 GCTAAAGGAGTTATAAAAAGGCATGGCGATATTCTTTTTTATTGTGATACAGCTAGACCT 18552 || |||| | ||| | | | || |||| ||||| || || ||||| |||||| Sbjct 1443 GCGAAAGAAATTAAACTGAAATACGGTAATATCAACTTTTACTGCGACACAGCAAGACCT 1502 Query 18553 GAACATATTGAACGATTTAGAAGAGAGAAGATAAAAGCAAGATATGCTGACAAAGCCGTT 18612 || ||| | | | || |||| ||| ||| |||| | || || || || ||| Sbjct 1503 GAGCATGTAATAAGGTTCCGAAGGGAGCGAATACGTGCAATTAACGCAGATAAGGCGGTT 1562 Query 18613 ATTGCTGGCATTGAAG 18628 | |||| ||||||| Sbjct 1563 GTATCTGGTATTGAAG 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137498661553848