Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq9148 89.7 5e-13 seq88 89.7 5e-13 seq23 89.7 5e-13 seq20 89.7 5e-13 seq7 89.7 5e-13 seq4 89.7 5e-13 seq3 89.7 5e-13 seq468 84.2 2e-11 seq21 84.2 2e-11 seq17 84.2 2e-11 >seq9148 Length=160301 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 38941 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 38882 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 38881 CCCGTTCCCGCAAC 38868 >seq88 Length=878102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 497094 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 497153 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 497154 CCCGTTCCCGCAAC 497167 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 646430 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 646371 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 646370 CCCGTTCCCGCAAC 646357 >seq23 Length=61753794 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 56573996 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 56573937 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 56573936 CCCGTTCCCGCAAC 56573923 >seq20 Length=65574513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 58459640 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 58459581 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 58459580 CCCGTTCCCGCAAC 58459567 >seq7 Length=42802127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 9419097 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 9419038 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 9419037 CCCGTTCCCGCAAC 9419024 >seq4 Length=78750349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 158359 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 158418 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 158419 CCCGTTCCCGCAAC 158432 >seq3 Length=37363027 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 6248689 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 6248630 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 6248629 CCCGTTCCCGCAAC 6248616 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 92617 GGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAATCC 92676 ||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||||| Sbjct 11448383 GGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAATCC 11448324 Query 92677 CACTCCCGCCAC 92688 | |||||| || Sbjct 11448323 CGTTCCCGCAAC 11448312 >seq468 Length=167462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 70761 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 70702 Query 92675 CCCACTCCCGCCAC 92688 | | |||||| || Sbjct 70701 CTCGTTCCCGCAAC 70688 >seq21 Length=47987235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| ||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 19707861 GCGGGATAGAGCAATTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 19707802 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 19707801 CCCGTTCCCGCAAC 19707788 >seq17 Length=39386523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 5061810 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 5061869 Query 92675 CCCACTCCCGCCAC 92688 || |||||| || Sbjct 5061870 CCTGTTCCCGCAAC 5061883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526538183472960