Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq9148 89.7 5e-13
seq88 89.7 5e-13
seq23 89.7 5e-13
seq20 89.7 5e-13
seq7 89.7 5e-13
seq4 89.7 5e-13
seq3 89.7 5e-13
seq468 84.2 2e-11
seq21 84.2 2e-11
seq17 84.2 2e-11
>seq9148
Length=160301
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 38941 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 38882
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 38881 CCCGTTCCCGCAAC 38868
>seq88
Length=878102
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 497094 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 497153
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 497154 CCCGTTCCCGCAAC 497167
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 646430 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 646371
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 646370 CCCGTTCCCGCAAC 646357
>seq23
Length=61753794
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 56573996 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 56573937
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 56573936 CCCGTTCCCGCAAC 56573923
>seq20
Length=65574513
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 58459640 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 58459581
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 58459580 CCCGTTCCCGCAAC 58459567
>seq7
Length=42802127
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 9419097 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 9419038
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 9419037 CCCGTTCCCGCAAC 9419024
>seq4
Length=78750349
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 158359 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 158418
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 158419 CCCGTTCCCGCAAC 158432
>seq3
Length=37363027
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 6248689 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 6248630
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 6248629 CCCGTTCCCGCAAC 6248616
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 92617 GGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAATCC 92676
||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct 11448383 GGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAATCC 11448324
Query 92677 CACTCCCGCCAC 92688
| |||||| ||
Sbjct 11448323 CGTTCCCGCAAC 11448312
>seq468
Length=167462
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 70761 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 70702
Query 92675 CCCACTCCCGCCAC 92688
| | |||||| ||
Sbjct 70701 CTCGTTCCCGCAAC 70688
>seq21
Length=47987235
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| ||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 19707861 GCGGGATAGAGCAATTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 19707802
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 19707801 CCCGTTCCCGCAAC 19707788
>seq17
Length=39386523
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 5061810 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 5061869
Query 92675 CCCACTCCCGCCAC 92688
|| |||||| ||
Sbjct 5061870 CCTGTTCCCGCAAC 5061883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526538183472960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |