Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2013 95.1 5e-15 >seq2013 Length=18648 Score = 95.1 bits (104), Expect = 5e-15 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 15503 GGTTAAACTGCTGTGGTCCACCGGTGACGGACTGTGCCTCCTGACCAAACGGCTGGAGCG 15562 ||| || |||||||||| | ||| | || |||| || | | || ||||| || || Sbjct 17837 GGTCAAGCTGCTGTGGTTCGACGGCCAGGGCTTGTGTCTGTTCTCGAAGCGGCTCGACCG 17896 Query 15563 TGGGCGCTTCGCCTGGCCGTCAGCCCGTGAT-GGCAAAGTGTTCCTTACGCAGGCGCAGC 15621 || ||||||| ||||||| | ||| || |||| ||| || || |||||||||| Sbjct 17897 CGGCCGCTTCGTCTGGCCGGT-GACCGCGACCGGCACGGTGACGCTGACACAGGCGCAGC 17955 Query 15622 TGGCGATGCTGCTGGAAGGTATCGACTGGCGACAGCCTAAGCGG 15665 || ||||||||||||| || ||||||||||| | ||| ||||| Sbjct 17956 TGTCGATGCTGCTGGAGGGCATCGACTGGCGTCGGCCCGAGCGG 17999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198723441604624