Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_011614.1 Length=42526 Score E Sequences producing significant alignments: (Bits) Value seq1219 80.6 7e-11 >seq1219 Length=45996 Score = 80.6 bits (88), Expect = 7e-11 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 7145 GTAGGGACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAA 7204 |||| || || ||| | || || || ||| |||| | || | |||| || ||| Sbjct 33684 GTAGCGAACTTTACACTTGCGGTGAATAGACCATTCAAAAACAGTGAAGGGGAAAACGAA 33625 Query 7205 GCAGATTTTATAAACGTAGTAGTGTTCAAAAAACAAGCCGAAAATGTTAAAAACTACCTT 7264 || ||||| || ||| ||||||| |||| ||| || || || |||| | | Sbjct 33624 GCGGATTTCATCAACTGCGTAGTGTGGCGCAAACCAGCAGAGAACGTAGCTAACTTCTTG 33565 Query 7265 TCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGTAACTACGAAAATAAA 7324 ||||| ||||||||| |||| || || |||| ||||| |||||||| ||||| Sbjct 33564 AAGAAAGGAAGTCTGGCAGGTATAGATGGCAGAGTACAGACACGCAACTACGACAATAAC 33505 Query 7325 GACGGACAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACC 7383 || || | || ||||||||||| || || || || || || || ||| |||| || Sbjct 33504 GAAGGCAAGCGGGTATTTGTGACTGAGGTCGTGGCAGAGTCGGTGCAGTTCCTAGAGCC 33446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135946830151488