Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq104 136 5e-27 seq10 96.9 4e-15 seq242 91.5 2e-13 >seq104 Length=774161 Score = 136 bits (150), Expect = 5e-27 Identities = 255/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | | ||| |||||| || ||| | | || ||||| || Sbjct 269183 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 269124 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | ||||| || |||| || ||||||||||| || |||||||||||||| Sbjct 269123 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 269067 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || |||||| || | ||||||||| || | ||||| | | ||| ||| || Sbjct 269066 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 269007 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 ||||||||| ||||| | ||||| || || || ||| | | | | ||| ||| | Sbjct 269006 GGCATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 268948 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || || || |||||||||||||| || ||||| | | ||||| Sbjct 268947 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA- 268889 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || || ||||||||||| || Sbjct 268888 ATGGAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 268829 Query 16242 GTACCTGG 16249 || || || Sbjct 268828 GTTCCAGG 268821 >seq10 Length=91128445 Score = 96.9 bits (106), Expect = 4e-15 Identities = 308/469 (66%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| || || ||| | ||| || || || ||||||| || || || | | ||| Sbjct 89879471 ATCCAGAATTTCAGGCCTATTAGTGGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 89879530 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| ||||| || | |||||| |||| |||||||||| || Sbjct 89879531 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 89879587 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| | | || |||| || |||||||||||||| ||||| || | || Sbjct 89879588 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 89879647 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 16151 ||| ||| | || | ||| || |||| || || || | || || || ||| Sbjct 89879648 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 89879705 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||||||| | || | || | ||| | ||| || || | ||| || Sbjct 89879706 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 89879765 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 |||||||| ||| || | |||||||| || ||||| || || || | ||| Sbjct 89879766 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 89879825 Query 16272 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 ||||| |||| ||| || | || | | ||| |||| ||||| || ||||| | Sbjct 89879826 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 89879883 Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 89879884 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 89879932 >seq242 Length=346230 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/471 (66%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| || || ||| | ||| || || || ||||||| || || || | | ||| Sbjct 215903 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 215962 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| ||||| || | |||||| |||| |||||||||| || Sbjct 215963 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 216019 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| | | || |||| || |||||||||||||| ||||| || | || Sbjct 216020 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 216079 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 ||| | || || | || | ||| || |||| || || || | || || || | Sbjct 216080 TGG--GGAGTTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGC 216135 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||||||| | || | || | ||| | ||| || || | ||| | Sbjct 216136 CTACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCC 216195 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||||||| ||| || | |||||||| || ||||| || || || | | Sbjct 216196 CTGCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTC 216255 Query 16270 CTCGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || ||||| |||| ||| || | || | | ||| |||| ||||| || ||||| Sbjct 216256 CTTTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCAC 216313 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 | ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 216314 TACCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 216364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620671418106560