Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq26 91.5 2e-13 seq21 86.0 7e-12 seq27 84.2 3e-11 seq4 84.2 3e-11 >seq26 Length=23272750 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 138231 AGAAAGTGATAT--AGTTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAAT 138288 ||||| |||||| |||||||| || ||| |||||||||| | |||| |||||||||||| Sbjct 14276991 AGAAATTGATATCAAGTTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAAT 14277049 Query 138289 CCACCACCCTAGGTTCGACTCCTAGTGGGAGCTT 138322 ||| | ||| ||||||||||| |||||| ||| Sbjct 14277050 CCAGCGACCTGGGTTCGACTCCCGGTGGGACCTT 14277083 >seq21 Length=47987235 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 138245 TTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAATCCACCACCCTAGGTTC 138304 ||||||||| ||| |||||||||| | |||| ||||||||||||||| | ||| ||||| Sbjct 6935773 TTGGGGCTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTC 6935715 Query 138305 GACTCCTAGTGGGAGCTTAACCTCTCTTAGCT 138336 |||||| |||||| ||| |||| ||| || Sbjct 6935714 GACTCCCGGTGGGACCTTGCTCTCTTTTATCT 6935683 >seq27 Length=3408634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| | Sbjct 657581 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCT 657522 Query 136777 GGGAACAGCTTTTAGATATATTTT 136800 |||| || | || ||||| |||| Sbjct 657521 GGGACCATTTGTTTGATATTTTTT 657498 >seq4 Length=78750349 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 42498275 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 42498220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588908650594400